Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02345 ATGGCTTCCAGGCGTTTGAGGGCATTCAATCGATGGATGAAATCGAAGGGTTTCCAGTGGAGCGATGCATTGGAGTTTGTGGATACACCTGGCGAGGGAATAGCGGTGAGAGCTTTGCGCCAATTGGAGGAAGGTGATGTTGTGGCCAAAATGCCAAAAGAAGCTTGCCTCACCACCAAGACTAGTGGGGCACGTGCGATCATTGAAGAGGCTGGTTTGGATGGTCATCTGGGGCTAGCATTTGCCATCATGTATGAGAGAAGCTTGGGTGAGGACTCACCTTGGTATGGATACCTTCAACTCTTGCCTCACCAAGAATGCGTGCCAATTGTTTGGACCCTAGATGAAGTAAACGAGCTTTTGTGTGGTACTGAGCTTCACCAGACTGTGCAAGAAGACAAGGCTCTGATTTACGAGGACTGGAAAGAGAATATTCTTCCCCTATTGGATTTGGAACCTTTAAAGCTAAACCCGAAATTCTTTGACATAGAACAATACTTTGCTGCGAAAAGTCTTATATCTTCTCGATCCTTTGAGATTGATGATTACCATGGTTTTGGCATGGTTCCCTTGGCAGATCTATTCAATCATAAAACAGGTGCAGAGGATGTGCATTTTACTGCTATGTCCTCTAATTATGAATCAGGTAGTGATGTGGATGGTAGTAATAATGATGAGGGCATTGTTAAGGAAGAAGTAGCATTGGCTCAGAATTCCTCTATGGATATGACTGTGTCAATTGAGGCTAATGTTGGGAACAACATTGATAGTGATTTGGAGAGTTCTTCAGTTAGCGGAGATGATACTTCTATGTTGGAGATGATTACGATAAAAGATGTCAGTAGTGGAACTGAGATATTTAATACTTATGGACTATTGGGTAATGCTGCTTTGCTCCATAGATATGGATTTACCGAGCAAGACAATTCATATGATATTGTAAACATAGACATGGAGCTGGTACTTCAATGGTGTTCTTCAGCTTTTTCTGACCGCCACAGTAGAGCAAGAGTTTCCCTTTGGAGAAGGTTAGGCTATTCTGCATGTGGCAGCCAAGACTCTGAATATTTTGAGATCTCATTTGACGGAGAACCACAAATTGAACTCCTCATTTTATTACACATCATGTTATTGCTAGATGATGCTTATCAAAAGTTAGACCTATCAGTATCAGTTGCTGGGAATTGTCCTGAATCAAATGGTGGAACTGCCCATCTGAATGGGAATATCTTTCCTAACGAAGCATTTAATATGAGCAAGAAGTCCTTGCTGTCTAAAAGGGTCTGTGATACCCTGTTGTCGCTAGCTGACATGAGGGAGAGTCTCTATGGTTTGAATTCAGTGGAAGATGATATTGAAGCATTGGAAAGGTGTAGTTTAGATAGAGAGAGGAAGCTGTATCATTCTTTGGTGCTGCGCACCAATGAAAGGAAGATTCTTCAAAAGCTCAGAAATTATGCTTCTCAGCCATTTGAAATCAATAAGCATAGTTCACCTAGGAAGAAATTGAAAAGGACAACAAAGAGAAGGGATTGA 1536 0.418 MASRRLRAFNRWMKSKGFQWSDALEFVDTPGEGIAVRALRQLEEGDVVAKMPKEACLTTKTSGARAIIEEAGLDGHLGLAFAIMYERSLGEDSPWYGYLQLLPHQECVPIVWTLDEVNELLCGTELHQTVQEDKALIYEDWKENILPLLDLEPLKLNPKFFDIEQYFAAKSLISSRSFEIDDYHGFGMVPLADLFNHKTGAEDVHFTAMSSNYESGSDVDGSNNDEGIVKEEVALAQNSSMDMTVSIEANVGNNIDSDLESSSVSGDDTSMLEMITIKDVSSGTEIFNTYGLLGNAALLHRYGFTEQDNSYDIVNIDMELVLQWCSSAFSDRHSRARVSLWRRLGYSACGSQDSEYFEISFDGEPQIELLILLHIMLLLDDAYQKLDLSVSVAGNCPESNGGTAHLNGNIFPNEAFNMSKKSLLSKRVCDTLLSLADMRESLYGLNSVEDDIEALERCSLDRERKLYHSLVLRTNERKILQKLRNYASQPFEINKHSSPRKKLKRTTKRRD 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02345 511 SUPERFAMILY SET domain 269 310 IPR046341 -
Vimu3g02345 511 Gene3D set domain protein methyltransferase, domain 1 2 304 - -
Vimu3g02345 511 Gene3D - 307 497 IPR036464 -
Vimu3g02345 511 CDD SET_LSMT 23 305 - -
Vimu3g02345 511 PIRSF RMS1_SET 1 490 IPR011383 GO:0016279|GO:0018026
Vimu3g02345 511 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 5 462 - -
Vimu3g02345 511 MobiDBLite consensus disorder prediction 490 511 - -
Vimu3g02345 511 Pfam SET domain 33 291 IPR001214 GO:0005515
Vimu3g02345 511 SUPERFAMILY SET domain 3 206 IPR046341 -
Vimu3g02345 511 ProSiteProfiles SET domain profile. 22 291 IPR001214 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02345 2 508 NAC Transcription Factor Family AT3G56570 53.358 0.0 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vimu3g02345 SET 6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02345 - K05302 vra:106769924 951.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02345 3 37985669 37989011 Vimu3g02345 3 37985669 37989011 ECH