Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02340 ATGGCAACTAGACTTCAGTTTGAGAATAATTGTGAAGTTGGAGTCTTCTCAAAACTTACCAATGCCTATTGTTTGGTTGCTATTGGAGGTTCTGAAAACTTCTACAGTGCATTTGAGACTGAGTTAGCAGATGTTATCCCCGTGATCAAGACCTCCATTGGTGGCACCCGAATAGTTGGTCGCCTTTGTGTTGGAAACAAGAATGGCCTTCTCTTGCCCCATACCACCACAGACCAAGAGCTTCAACATTTGAGAAATAGTCTACCTGATCAAGTTGTTGTTCAGCGTATAGAAGAAAGATTATCCGCACTGGGAAATTGTATAGCATGTAATGACCATGTGGCTCTCACCCATACTGATCTAGACAAGGAAACTGAGGAGATGATTGCAGATATTCTTGGAGTAGAAGTTTTCAGGCAGACTATTGCGGGCAATATTCTTGTGGGCAGTTACTGTGCATTCTCGAACAGGGGTGGTTTGGTCCACCCTCATACTTCCATTGAAGACTTGGATGAACTTTCGACCCTTCTTCAGGTTCCTTTGGTTGCTGGGACTGTGAATCGTGGTAGTGAAGTGATAGCTGCTGGCATGACAGTAAATGATTGGACAGCATTTTGTGGTTCAGACACCACAGCAACGGAGCTCTCTGTGATTGAGAGTGTTTTCAAGTTGAGAGAAGCTCAACCTAGTGCCATTGTCGATGAGATGAGGAAATCACTGGTTGATACTTATGTCTAA 738 0.4377 MATRLQFENNCEVGVFSKLTNAYCLVAIGGSENFYSAFETELADVIPVIKTSIGGTRIVGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDKETEEMIADILGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIESVFKLREAQPSAIVDEMRKSLVDTYV 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02340 245 SMART eIF6neu2 3 204 IPR002769 GO:0042256|GO:0043022
Vimu3g02340 245 PIRSF Transl_init_IF-6 1 226 IPR002769 GO:0042256|GO:0043022
Vimu3g02340 245 CDD IF6 2 223 IPR002769 GO:0042256|GO:0043022
Vimu3g02340 245 Hamap Translation initiation factor 6 [eif6]. 1 245 IPR002769 GO:0042256|GO:0043022
Vimu3g02340 245 NCBIfam translation initiation factor IF-6 4 224 IPR002769 GO:0042256|GO:0043022
Vimu3g02340 245 Pfam eIF-6 family 4 203 IPR002769 GO:0042256|GO:0043022
Vimu3g02340 245 SUPERFAMILY Pentein 1 224 - -
Vimu3g02340 245 FunFam Eukaryotic translation initiation factor 6 1 225 - -
Vimu3g02340 245 Gene3D - 1 225 - -
Vimu3g02340 245 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 244 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02340 Vimu-Chr3 37950874 37954373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02340 1 245 Eukaryotic Initiation Factors Gene Family AT3G55620 91.429 8.70e-175 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02340 K03264 - gmx:100777602 478.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu8g01838 8 24214838 24219833 Vimu3g02340 3 37950874 37954373 PCT