Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02336 ATGGTGGTAATTGATAGACTTTCCAAGTTTGGCCATTTCATTCCCTTGAAAACTGATTATAACAGCAAGACAATGACAGATGCTTTTATTAATAATGTGGCAAAGATTCATGGTTTCCCCAGAACCATTGTTTCAGACAGAGATAGGATTTTTATCAGCTCGTTTTGGCAGCACCTATTCAAAGCTCAAGGCACTACATTGGCAATGAGCTCAGCATATCACCCTCAAAGTAATGGCCAAACTGAGATACTTAACAAGACCCTGGAGATTCCCAAGCTCTGGTTCTCCATGCTTCCGTGGGCACAATATTGGTATAACTCTTCTTACCATCATAGTATTAAAATGAGTCCATTCAAAGTTGTTTTTGGTCGCGAACCCCCGGCGGTTATTCCTTATGAAGTTAATGTTAACGATCCACCTACTGTTCAAGACTCCCTCCTTATTAGAAATACATTGCAGCAACAGCTCAAGCAAAATCTCATGAGAGCTCAAAATTACATGAAAATGCAGGCGGATAAAAAGCGTCGAGAGTTGCAAAACATTGGTGATCTCGCATTAGTAAAACTGCAGCTGTATCGACAAAATTCAGTGACTTTGAGAAAGAATGAAAAGCTCAGCATGCTAATCGAGAAGATAGGTACAATGGCTTACAAGTTAAAACCACCTCCAACAGCTCGAATTCACCCGGTTTTTCACATATCGTTGCTCAAAAAGTTTGTGGGCAATCCATCTCCACCATACTTACCGTTACCCTTGACCACTAATGAGTTTGGTCCTGTTCTCAGCCCGTTGAAAGTGCTAGATACAAGAATTCTCCAGCACAACTCCAAGGACATACCACAAGATCTTAATGAATTTCAAAATGCTTATCCTCATTTCAACCTTGAGGACAGGGTTGCTTGCCATGGGGAGGGTATTGTAACAAATAAAGAGACCCCTGCACAAAATGGTAGAAGATGTTTGAACCGAAAGGCTGAGAGTGTAGAAGAATTGGAGGGAAAGACAACTGTCAGCAAGGGACACGTGGAAGAAGAAAAAATGAGAAAGGACATGTGTAAAAGGAAGAACCCAAAATCCGGTGGGTTGGTTGACTATGATTATGATGAGGATGATGAAGACTACCGCCCACCACCAAAGAATAATCCAGAAGCATCTGAAGAGTATGAAGGAACAATGAAGTCTCTCAGGCTGAAAAGAAAATTGACAAAGGTCGAGATTTTACAGATGCCGAAGTTGTCTAAAACTTCAAAATCTAAAGATCGTGTTTTTTCTGCCTTATGTTCAACTTTGAGCCAGGCTGTGCTACCGCGTAAGAAACCTTTAGTCAACTTTATTACTGTTCCTTGTATAGAGGACAATCAAGAAAAGGAGCAACATGTTTCTGGAAGCTGCTGTGAGAATAGTAGTGTATCGGCTGAGCTAAACCATTTAGAGAAAGAAACTACTGCATTTCGAAATTCTTCTAATAGGTTGTACGACACATCTGACAATGGACAATTGGATGGTGAGGAACACACTATGGTTTCACCAAAATCCCCGCCAGAGACACTAAGGTTGTACCCTGTTGCACCTTTGCTGGTACCTCGTGAATGTAGAGAAGATGTTACTATAGATGGTTACTGCATAAAGAAAAAGTCAAGAGTGATAGTGAATGCATGGGCTTTGGGGAGAGATTCTAAAGTTTGGTCAGATAATGCTGAGGAGTTTTGTCCTGAAAGATTTTCAAATAGCAATGTGGACATAAAAGGATTTGACTTTAGACTCATACCATTTGGTTCAGGTCGCAGAGGGTGCCTTGGGATTCATTTGGGTCTCACCACTGCTAAGATTGTTCTGGCTCAATTGGTTCATTGCTTCAATTGGGAGCTTCCTTTGGGCATGTCCCCTGATGAATTGGACATGACTGAGAAATTTGGTCTTACAATGCCAAGAAGTAAGCATTTGCTAGCTGTGCCAACTTATCGCCTAGCAGATGAAATTGGAAAGCAATAA 1992 0.4111 MVVIDRLSKFGHFIPLKTDYNSKTMTDAFINNVAKIHGFPRTIVSDRDRIFISSFWQHLFKAQGTTLAMSSAYHPQSNGQTEILNKTLEIPKLWFSMLPWAQYWYNSSYHHSIKMSPFKVVFGREPPAVIPYEVNVNDPPTVQDSLLIRNTLQQQLKQNLMRAQNYMKMQADKKRRELQNIGDLALVKLQLYRQNSVTLRKNEKLSMLIEKIGTMAYKLKPPPTARIHPVFHISLLKKFVGNPSPPYLPLPLTTNEFGPVLSPLKVLDTRILQHNSKDIPQDLNEFQNAYPHFNLEDRVACHGEGIVTNKETPAQNGRRCLNRKAESVEELEGKTTVSKGHVEEEKMRKDMCKRKNPKSGGLVDYDYDEDDEDYRPPPKNNPEASEEYEGTMKSLRLKRKLTKVEILQMPKLSKTSKSKDRVFSALCSTLSQAVLPRKKPLVNFITVPCIEDNQEKEQHVSGSCCENSSVSAELNHLEKETTAFRNSSNRLYDTSDNGQLDGEEHTMVSPKSPPETLRLYPVAPLLVPRECREDVTIDGYCIKKKSRVIVNAWALGRDSKVWSDNAEEFCPERFSNSNVDIKGFDFRLIPFGSGRRGCLGIHLGLTTAKIVLAQLVHCFNWELPLGMSPDELDMTEKFGLTMPRSKHLLAVPTYRLADEIGKQ 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02336 663 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 591 600 IPR017972 GO:0005506|GO:0016705
Vimu3g02336 663 MobiDBLite consensus disorder prediction 331 394 - -
Vimu3g02336 663 SUPERFAMILY Cytochrome P450 515 655 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g02336 663 MobiDBLite consensus disorder prediction 489 513 - -
Vimu3g02336 663 Pfam Cytochrome P450 515 647 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g02336 663 MobiDBLite consensus disorder prediction 331 364 - -
Vimu3g02336 663 PRINTS E-class P450 group I signature 588 598 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g02336 663 PRINTS E-class P450 group I signature 510 528 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g02336 663 PRINTS E-class P450 group I signature 598 621 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g02336 663 Gene3D - 1 166 IPR036397 GO:0003676
Vimu3g02336 663 PANTHER CYTOCHROME P450 93A3-LIKE 515 657 - -
Vimu3g02336 663 ProSiteProfiles Integrase catalytic domain profile. 1 89 IPR001584 GO:0015074
Vimu3g02336 663 Gene3D Cytochrome P450 514 653 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu3g02336 663 SUPERFAMILY Ribonuclease H-like 1 119 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02336 Vimu-Chr3 37898243 37901250 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02336 515 656 Monolignol Biosynthesis Gene Families AT4G36220 53.147 9.54e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02336 - - tpra:123904601 353.984