Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02325 ATGGCAACAACAAGAAGATATGAGTTTGGAATGAATGAGAGTAGCCACCCAGACTCTATCAGAGCCACCATAGCTGAATTCATCTCCACTTGCATCTTTGTCTTTGTTGGAGAAGGCTCAGTCCTTGCTTTGAATCAAATTTACAAGGAACCTGGGTCATCAGCAGCTGAGCTAGTGGTAATTGCAGTGGCTCATGCCTTTGCTCTATTTGCTGCTATTGCTGCTAGTGCACATGTTTCTGGTGGACACGTGAATCCTGCTGTCACTTTTGGTGCTCTTCTTGGTGGAAGGATATCCGTCCTTAAAGCCATTTACTACTGGGTTGCTCAAATCCTTGGTTCTATTGTTGCTGCTCTCTTGTTGAGACTTGTCACTAACAACATGAGACCAGAGGGGTTCAGTTTATCAGTTGGGGTTGGAGCGGTTCATGGTCTTATACTTGAAATTTGCCTCACATTTGGTCTGATGCACACTGTGTATGCCACTGCTATGGATCCTAAAAGGGGTACAATTAGCACAATTGCACCCTTAGCCATTGGACTGGTGGTAGGAGCAAACATCCTGGCTGGTGGACCTTTTGATGGAGCATGCATGAACCCTGCTCGGGCTTTTGGGCCTGCATTGGTGGGCTGGAGGTGGGAGAACCACTGGATCTTCTGGGTGGGCCCATTACTTGGGGCAGCCCTAGCAGCAGTCCTGTATGAATTCGTTGTTATCCCAATTGAGCCTCCTCCGCATCAACCTTTGCCTACTGAAGAGTACTAG 765 0.4771 MATTRRYEFGMNESSHPDSIRATIAEFISTCIFVFVGEGSVLALNQIYKEPGSSAAELVVIAVAHAFALFAAIAASAHVSGGHVNPAVTFGALLGGRISVLKAIYYWVAQILGSIVAALLLRLVTNNMRPEGFSLSVGVGAVHGLILEICLTFGLMHTVYATAMDPKRGTISTIAPLAIGLVVGANILAGGPFDGACMNPARAFGPALVGWRWENHWIFWVGPLLGAALAAVLYEFVVIPIEPPPHQPLPTEEY 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02325 254 Pfam Major intrinsic protein 14 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu3g02325 254 NCBIfam MIP family channel protein 25 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu3g02325 254 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu3g02325 254 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu3g02325 254 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu3g02325 254 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu3g02325 254 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu3g02325 254 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu3g02325 254 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu3g02325 254 FunFam Probable aquaporin TIP1-1 5 253 - -
Vimu3g02325 254 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Vimu3g02325 254 Gene3D Glycerol uptake facilitator protein. 9 242 IPR023271 -
Vimu3g02325 254 PANTHER AQUAPORIN-8 12 242 IPR034294 -
Vimu3g02325 254 SUPERFAMILY Aquaporin-like 13 247 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02325 Vimu-Chr3 37788881 37789986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02325 1 254 Major Intrinsic Protein MIP AT1G73190 63.060 9.22e-114 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02325 K09873 - gmx:100814469 373.244