Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02310 ATGGGGAGCAGAAGCTACTCCGCCAATCCCGCCGATTACAAGCTTCTAGAAGAAGTTGGTTACGGTGCTAGCGCCACTGTCTACCGGGCAATCTACCTCCCCTACAACGAGGAGGTCGCCGTCAAGTGTCTGGATCTGGATCGATGCAACAGCAATCTCGACGATATAAGGAGGGAGGCGCAGACCATGAGCCTCATCGAGCATCCCAACGTCGTCAGGGCCTTCTGCTCCTTCGTCGTAGACCGCAGTCTGTGGGTGGTCATGGGATTCATGGCGCAGGGCTCCTGCTTGCACCTCATGAAGGCGGCCTATCCAGAAGGATTCGAAGAGGCAGCCATCGGATCTATTCTCAAGGAGACTCTCAAGGCGCTCGAGTACCTCCACCGACATGGACACATTCACCGCGATGTTAAGGCCGGGAATATTCTTCTCGATTCCAACGGCCAGGTCAAGCTCGCCGACTTTGGAGTTTCCGCTTGCATGTTTGACACCGGCGACCGCCAGCGTTCCAGGAATACCTTCGTCGGAACTCCCTGCTGGTGCTTCTCTCGCTTCGGATGGCGCCGGAGAGCGGATATTTGGTCTTTTGGAATCACGGCGTTGGAGTTGGCTCATGGTCACGCACCTTTCTCCAAGTATCCTCCCATGAAGGTTCTTTTGATGACAATTCAGAATGCTCCTCCGGGGCTTGATTATGATCGTGACAGAAAGTTCTCCAAGTCTTTTAAGGAAATGGTTGCTATGTGCCTGGTAAAAGATCAAACAAAGAGGCCATCCGTGGAGAAGTTGCTCAAACACTCCTTCTTCAGACAAGCTAAGCCTCCGGAGCTTTCTGTTAAGAAATTATTTGCTGATTTACCACCTCTGTGGAACCGTGTCAAATCCCTCCAGAGTGAATATCATCGGGGAGTTAGTGCGTGGAACTTCGATATTGATGATTTGAAAGCTCAAGCTGCATTGATGCAGGACGATGATGATATTGCAGAGATGAGGGAAGAAGATGAAAACAAATTCTTCAGCTCTTACAAGGGTATAAGTGATTTCCAGTTTTCTATGGACAAAAAGAATTCAAATAACTTGCAACAAGATGAGTTTGCAGTACAAGTAGGTAGTAACGACATACCACAGAGTGAGAAGAGAAATGGATCAGTGGCTGAAGCAACATCTTCTACTCTAGAGAATGATATCGGAACAAGCAAGATTAAATCACAATCAGTGAAACTTGGTAAAACCCAAAGTGGACCCCTGGTGCCAGGATCAGTGCTGGGTCATTCTTTATCTGAAAAAGGGCGTGCATTTGAAAGGTTTGAGAATGAAAATCAGTTGTCAGGTGAGAAAAGTAATCGTGATATTAGACGAGCTCCAAGCTTTAGTGGTCCATTAATGCTTCCAAACCGAGCTTCAGCAAATAGTTTATCAGCACCAATAAAATCTTCTGGAGGATTCAGAGATTCCTTGGATGATAAGTCTAATAAGGCCAATCTAGTGCAAATTAAAGGACGGTTTTCAGTGACATCAGAAAATTTAGATCTGGTGAAGGATATTCCTGTAAGTTCAGTTTCTCGCCGATCGTCACAGGGGTCTCCAATGAGGAAATCTGCCAGTGTTGGTGATTGGATGGTGGATTACAAACAAATGCCAATTGGTCAGTCCTCCAATGATTCTGCCAATATCAACATTCCTGCATCATTTCTAGTGCCTCATCTTCATAATCTTTTCCAGCAAACATCTATTCAACAGGATCTTATAATGAATATGTTGAATGGCTTGCAATCCGCAGAGGCAAATGATGCTTCTCAGAATGGAAAGTTGCCACCATTGCCTCGCAATTCAGAAAACAATGGAAGTGTTGACACAGCAGTTTCAGAGAGGGAACAGGTGCTGCTAGCCAAAATTTCAGAACTTCAATCTCGGATGATTAATTTGACTGATGAACTAACTTATGAGAAATTAAGATACGTGCAGTTACAACAACAGCTAGCTGCTGTCTGCAGCCAAGAACAAAATGGGGAAAGAGAGGAATATGCATGA 2031 0.4574 MGSRSYSANPADYKLLEEVGYGASATVYRAIYLPYNEEVAVKCLDLDRCNSNLDDIRREAQTMSLIEHPNVVRAFCSFVVDRSLWVVMGFMAQGSCLHLMKAAYPEGFEEAAIGSILKETLKALEYLHRHGHIHRDVKAGNILLDSNGQVKLADFGVSACMFDTGDRQRSRNTFVGTPCWCFSRFGWRRRADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDRKFSKSFKEMVAMCLVKDQTKRPSVEKLLKHSFFRQAKPPELSVKKLFADLPPLWNRVKSLQSEYHRGVSAWNFDIDDLKAQAALMQDDDDIAEMREEDENKFFSSYKGISDFQFSMDKKNSNNLQQDEFAVQVGSNDIPQSEKRNGSVAEATSSTLENDIGTSKIKSQSVKLGKTQSGPLVPGSVLGHSLSEKGRAFERFENENQLSGEKSNRDIRRAPSFSGPLMLPNRASANSLSAPIKSSGGFRDSLDDKSNKANLVQIKGRFSVTSENLDLVKDIPVSSVSRRSSQGSPMRKSASVGDWMVDYKQMPIGQSSNDSANINIPASFLVPHLHNLFQQTSIQQDLIMNMLNGLQSAEANDASQNGKLPPLPRNSENNGSVDTAVSEREQVLLAKISELQSRMINLTDELTYEKLRYVQLQQQLAAVCSQEQNGEREEYA 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02310 676 ProSiteProfiles Protein kinase domain profile. 13 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02310 676 Gene3D Transferase(Phosphotransferase) domain 1 94 309 - -
Vimu3g02310 676 FunFam Serine/threonine-protein kinase BLUS1 2 90 - -
Vimu3g02310 676 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 4 650 IPR047173 GO:0043539
Vimu3g02310 676 SUPERFAMILY Protein kinase-like (PK-like) 12 303 IPR011009 -
Vimu3g02310 676 FunFam serine/threonine-protein kinase BLUS1-like isoform X2 94 310 - -
Vimu3g02310 676 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Vimu3g02310 676 Gene3D Phosphorylase Kinase; domain 1 3 89 - -
Vimu3g02310 676 MobiDBLite consensus disorder prediction 595 617 - -
Vimu3g02310 676 MobiDBLite consensus disorder prediction 371 398 - -
Vimu3g02310 676 Pfam Protein kinase domain 13 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02310 676 CDD STKc_OSR1_SPAK 12 269 - -
Vimu3g02310 676 SMART serkin_6 13 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02310 Vimu-Chr3 37672414 37680136 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02310 6 668 MAP Kinase Kinase Kinase Kinase AT4G10730 62.034 0.0 841
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Vimu3g02310 Pkinase 2.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02310 - - gmx:100783699 1215.29