Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02299 ATGAAAGGGGGGCGATCGCATCGCCCTCAGAGCTCTGACCCACCGGATGAGTGGGTGGACGGGTCGTGGACGGTGGATTGTATCTGCGGCGTGACCTTCGATGACGGCGAGGAGATGGTGAAGTGCGACGAGTGCGGCGTGTGGGTCCACACGCGCTGCTCGCGGTACGTGAAGGGCGACGACACCTTCGCCTGCGACAAGTGCAAGGCCAGGCACAACAACAACCCGGAGGAGACCGAGGTGGCGCAGTTCCTCGTGGAACTCCCCACCAAAACCATCTCCATGGACAACAAAAAGGCCCTACCCTCTCGGCCCAGGCTCTGGACTGATAAGCCCATTCAGGAGCGGGTCCACGTCCAGGGCCCACCCGGAGGCGACCCTTCCATCTTTTCCGCCACCTCCGTGTCCTCGATTTTCTCCCCTCACCTCTGGAAGGCCTGCGGGTACGTCCCCAAGAAGTTTAATTTCCAGTACAAGGAGTTTCCCTTCTGGAGCGATAACGATGATGATAAGGATAACGTTAACGAGAGTTTACAAGCACAAACAGAAGCTCAACCACAGGCACAAGATAATAACAAGAACGGGGCTGGGGCTCTTGTTTATTTGTCTAAAGACGGTGATAATAATGGTGCTGCTCTTGTATTGGACCCTTCCTCTGTTGATGCGAGATCTGGTCACGCGAAGGAAACCGAAACGGGCAAGTTTGGGAGCGATGATGTGCCGCCTCGTGTCCGCAGTGAGGTGAAGAAGGAGAGGACTCTGCTGAGACCTCCTGTTGTTCATAACAGTAAGCGCAGCAAAGGGGATTTCGGGTCTTCAAATTCGAAAGACCGAAGCGGGAAGAAGCGGGTTAGGACTACTTCTGACAGAGAGGTGGATCCCAGGAGGAGAACTCTGCATTCTTCTAAATCAGTATTTACAACCACCGGTGATGCAAAACAAGTGGACTTTTATGAGGACAGAGGACCAAAGATTTTAAAGGCTGACACTAGGAGCATAAAGAATAAAAACTTAAAAGAGACAGTTGTTCAAGAATGTGTTTCTGATGATTATTTGGCTGTTGATACCATCATGGAGGAGCCAAATAATAACATAGCAACTACGGAGGACTCTTCGGAACCATTATATCCTGACACGACTAGACATGGTGTTTCTGTTGTAGACGTTCCAACAGAAGAGAAGCCTAATCATAAACCTCCTATTGTAGTGGAGATGTCTTCTAAGACTGATGATGCTGTTACATCGGCTTTAAAGCAGAATAATGTTGGAAATGCTTCAGCTAAAGAAAAGGATGGGGATTGCTCAGTAGCTGATAATGCAGATGATAGTTTAGTAGTCAGAAGTGCTGCAAGTCCTCACAAAGAAGGTTATTGCGGTTCTGCACCAGAACTTGCAGATAACCAATTTTCTCAAGATCTTGAACGCAACAAGCGTACAAGCTCGACAAAATGCAAAGTTAAGATGAAGAGGGAAGACGACATTGATAATTTTAAGAAGCCCTCAATTTTTCATCCTTCTCCTATCAGTGATCTTAAAAACAATGAAAAACTATCTGATCACAAATCTGATGTTGAAGTGAATGATGCACCAGTTCCTAGTTTACCATCATGTGAAAATAAGGTCGGCAGTGTTGACATTTCATCAGAAGTAATCCCTGCTGATTATATCAATAAGCTCAATGAATTATCTGGTGATATTTGTCCTAGAAAGCAAGAACTGGAGGGTTATGAAGGTTCCTTGGAAACACAAAAGGTATTTTCTGAAATCAAAGATGGTTCAGATTCTGCTAAAGATCCTTCAAAATCTGAAGCACTTGGATGCCCAGCTAAAGTGCTAGCATGTGTTGGAAAGTCATCTCCAACTTCGTCAACCATGAACTCCAAATCATTGGGTCATCATGATATCAAATCTGAAGATACCGAAACAGCTAATCCTTTTACAAAGCATGGAGCGATGACTGATTCTAGTGTTCAGATAAAGAATGAAAACTGTACAAGTAATGTTGCCAGGGATGACAATCCAAAGAAGTCTGTAAGAGAGCGACCAAAATCCTCCTTGAATTCCAATTCAAAGGGATTGCATTCAAGCAGGAGTGTGCATAATTCTGTCTCCAAGCAAGCAAACTCAGATGTGAGGGATTCCGTTCCAGTATCTTCCAAGTCTTTGATACATCAGACTGCAAGTATATCAGGCTCTAGTGAGTCCAATGTATCATTGCACAATCAGAAGGTTCCAGTGCAGAATAAGATTTCATCTTCAGCACCACAGAAAGTTGAAAAAGTTAACCAAACAAACATTGCCACTTCCTCTAAGTTGAACCAAGGTCATGTGCCATCAACGAATCCTTCTCCAATATCAAATTCTTCAATGTTGAGTGATGAAGAGCTCGCTCTGCTACTGCACCAAGAACTGAATAGTTCACCCCGTGTACCCCGTGTCCCCCGAGCACGCCATGCAGGTAGCTTGCCCCAGCTTAGTTCTGCTAGTGCTACAAGCATGCTAATGAAGCGAACATCAGGTGGAGGAAAGGATCATTATTTGGTATCTAGACGAAAACACAAGGATGCATCTAGAGATGGGTCTGGCAGTTCTCGTGAACTGGAAGATGAAGCTAAAAAGGTAGAGAAGGAGAAGGGCCCAACCTCTTCTGATCAGAGGAAACAAGATATGTCATATATGGAGGATGCTCCTGCGAGGGAAGAAGGCCCTCCTGCATCTATGACAGCAGCAAACTCAATCGCAAACAACATTGTTTCTTCCACGTCTGCAATAGCAAACAGTGATCCATCCTCCCCTCCAGAGGATCAGAATCTATCATCCATGCGAAACTCACCTAGGAATATCTCTGATGATGATACAGTAACTGCTGGAAGGCCAGCTCATCACACCTTACCTGGTTTAATCAATGAAATTATTATGAGCAAAGGCAGGCGCATGACATATGAGGAACTCTGTAGTGCTGTGCTACCGCACTGGCATAACTTGAGGAAACACAATGGAGAGCGTTACGCATACTCAAGTCATTCCCAGGCTGTTCTTGATTGTTTGAGGAACCGGCAAGAATGGGCAAGGTTGGTTGATCGTGGTCCAAAGACAAATTCTAATAGAAAAAGGCGTAAACTGGATGCTGAGGAATCTGATGATAATGGATATGGAAAAGGAAGAACTGGGAAAGAGACCGAAGGGAAGAACTTTGAGTTGCAAAAGGAAGAGTTCCCGAAAGGCAAGCGTAAAGCTCGAAAACGCAGACGCCTTGCTCTTCAGGGAAGAGCAGTGAAGGATGTAAGGAGGAGACAGAAAACTGACTCACTAACGGATGAGGATGTTGGTCCATTCTCCAATTCTAGTGAAGAGAGCATGTTCAGTGAAGATGAAGTCCAGGTTGGCAGAATATGCCCAGCAGGAAGTACATCAGATGAGACAGGTAGTGCCTAA 3435 0.4565 MKGGRSHRPQSSDPPDEWVDGSWTVDCICGVTFDDGEEMVKCDECGVWVHTRCSRYVKGDDTFACDKCKARHNNNPEETEVAQFLVELPTKTISMDNKKALPSRPRLWTDKPIQERVHVQGPPGGDPSIFSATSVSSIFSPHLWKACGYVPKKFNFQYKEFPFWSDNDDDKDNVNESLQAQTEAQPQAQDNNKNGAGALVYLSKDGDNNGAALVLDPSSVDARSGHAKETETGKFGSDDVPPRVRSEVKKERTLLRPPVVHNSKRSKGDFGSSNSKDRSGKKRVRTTSDREVDPRRRTLHSSKSVFTTTGDAKQVDFYEDRGPKILKADTRSIKNKNLKETVVQECVSDDYLAVDTIMEEPNNNIATTEDSSEPLYPDTTRHGVSVVDVPTEEKPNHKPPIVVEMSSKTDDAVTSALKQNNVGNASAKEKDGDCSVADNADDSLVVRSAASPHKEGYCGSAPELADNQFSQDLERNKRTSSTKCKVKMKREDDIDNFKKPSIFHPSPISDLKNNEKLSDHKSDVEVNDAPVPSLPSCENKVGSVDISSEVIPADYINKLNELSGDICPRKQELEGYEGSLETQKVFSEIKDGSDSAKDPSKSEALGCPAKVLACVGKSSPTSSTMNSKSLGHHDIKSEDTETANPFTKHGAMTDSSVQIKNENCTSNVARDDNPKKSVRERPKSSLNSNSKGLHSSRSVHNSVSKQANSDVRDSVPVSSKSLIHQTASISGSSESNVSLHNQKVPVQNKISSSAPQKVEKVNQTNIATSSKLNQGHVPSTNPSPISNSSMLSDEELALLLHQELNSSPRVPRVPRARHAGSLPQLSSASATSMLMKRTSGGGKDHYLVSRRKHKDASRDGSGSSRELEDEAKKVEKEKGPTSSDQRKQDMSYMEDAPAREEGPPASMTAANSIANNIVSSTSAIANSDPSSPPEDQNLSSMRNSPRNISDDDTVTAGRPAHHTLPGLINEIIMSKGRRMTYEELCSAVLPHWHNLRKHNGERYAYSSHSQAVLDCLRNRQEWARLVDRGPKTNSNRKRRKLDAEESDDNGYGKGRTGKETEGKNFELQKEEFPKGKRKARKRRRLALQGRAVKDVRRRQKTDSLTDEDVGPFSNSSEESMFSEDEVQVGRICPAGSTSDETGSA 1144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02299 1144 MobiDBLite consensus disorder prediction 1088 1105 - -
Vimu3g02299 1144 MobiDBLite consensus disorder prediction 1026 1074 - -
Vimu3g02299 1144 MobiDBLite consensus disorder prediction 616 630 - -
Vimu3g02299 1144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 76 IPR013083 -
Vimu3g02299 1144 MobiDBLite consensus disorder prediction 616 719 - -
Vimu3g02299 1144 PANTHER UNCHARACTERIZED 1 1136 - -
Vimu3g02299 1144 MobiDBLite consensus disorder prediction 922 951 - -
Vimu3g02299 1144 MobiDBLite consensus disorder prediction 1026 1144 - -
Vimu3g02299 1144 MobiDBLite consensus disorder prediction 644 671 - -
Vimu3g02299 1144 MobiDBLite consensus disorder prediction 922 961 - -
Vimu3g02299 1144 MobiDBLite consensus disorder prediction 470 499 - -
Vimu3g02299 1144 MobiDBLite consensus disorder prediction 683 719 - -
Vimu3g02299 1144 MobiDBLite consensus disorder prediction 181 196 - -
Vimu3g02299 1144 ProSitePatterns Zinc finger PHD-type signature. 27 68 IPR019786 -
Vimu3g02299 1144 MobiDBLite consensus disorder prediction 406 540 - -
Vimu3g02299 1144 MobiDBLite consensus disorder prediction 222 258 - -
Vimu3g02299 1144 MobiDBLite consensus disorder prediction 822 836 - -
Vimu3g02299 1144 MobiDBLite consensus disorder prediction 843 896 - -
Vimu3g02299 1144 MobiDBLite consensus disorder prediction 408 426 - -
Vimu3g02299 1144 MobiDBLite consensus disorder prediction 767 788 - -
Vimu3g02299 1144 SMART PHD_3 26 69 IPR001965 -
Vimu3g02299 1144 MobiDBLite consensus disorder prediction 181 301 - -
Vimu3g02299 1144 MobiDBLite consensus disorder prediction 807 907 - -
Vimu3g02299 1144 MobiDBLite consensus disorder prediction 270 300 - -
Vimu3g02299 1144 SUPERFAMILY FYVE/PHD zinc finger 15 73 IPR011011 -
Vimu3g02299 1144 MobiDBLite consensus disorder prediction 362 381 - -
Vimu3g02299 1144 MobiDBLite consensus disorder prediction 1106 1122 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02299 25 68 PHD Transcription Factor Family AT5G22260 44.681 3.41e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02299 - - gmx:100810855 1766.9