Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02290 ATGGCAGCCATAGTTTGTGAGGTTCTTTTGAACATAGTTTTTGCAGGATCTTTTAGTGGAAGTTCAGAGAACCCACAAACTCTACGTCTTTCACTTCATAAGGAACACAAACCAGGGATATTATTGCTTATTGCCTTTGTGCATGAGGTTATGATGGGGACTGAGCTTATGAGAATATGTGTTAAAGAAGACAATGACGATTTTCCATCAGTTCCGCCAGGTTTTGAGTCATATACATCTTTCTCTCTGAAGAGGGTAGAAAACAATGAAAAACAAGATGATAAAAACATGATCAGTTGTTCAGCCTCAACAAGTGCTTCTGAATCACCATCAACTCAGGTGGAAAATGATGTTCAAGTTCGTGAAACTGCAAAGGTTCCTAGATCCCTTCGAAGAAGACCATGGATTAATTATGGACAACATGAGAACCATTCAGAAGAAGACTCTGACTGGCTTGTCTTCCTCGAGGAGTCATCCGTGGATGTCCAGATTGCAGTAATTGCCAAAAGATGGCGGCCTGAAGATGCTCGTAGACCAAATATTGAGGATGCTCCTGTTTTCTACCCCACTGAAGAGGAGTTTCAAGATACTTTGAAATATATATCAAGCATTCGCTCCAGGGCTGAGCCATATGGAATTTGCCGCATTGTTCCACCTTCTTCTTGGAAACCCCCCTGTCCTCTCAAGGAAAAAAGTAAATGGGAGGGTTCTAAATTTTCTACACGTGTACAGAGGATTGACAAACTTCAGAATCGTGATTCAATGAGAAAAATGTCACGGGTTCAAAGTAATATGAAGAGGAAAAGGAGAAGATGCACAAGAATGGGGGTGGATAATAGCACTAGAAGAGGACCCAATACAGCATTTTGTGAAGTGGAAAGGTTTGGGTTTGAACCTGGTCCAGAATTTACCTTGGAAACATTTCAGAGATATGCAGAAGATTTTCAGCTCCAATACTTCAGAAAAAATGAAAATGTATCTCATTTGGGTGGTAATACAACAATTTTAAATGGTACCTCAGAGCCTTCTGTGGAGAGCATTGAAGGTGAATATTGGCGGATGGTCGAGAGTCCTACTGAAGAAATTGAGGTGCTTTATGGAGCTGATCTGGAAACGGGAATTTTTGGGAGTGGTTTCCCTAGTAAATCTAGTCAGCTAGCTTCTGCCTCACATGAACAATACATAAAGTCTGGCTGGAATTTAAATAACTTTGCAAGGCTTCCTGGATCTCTGCTCTCTTATGAGAGCAGTGATATATCTGGTGTTTTAGTGCCATGGTTGTACATTGGAATGTGCTTTTCCTCCTTTTGTTGGCATGTGGAAGACCACCATTTATATTCATTGAACTACATGCATTGGGGAGCTCCAAAATTGTGGTATGGAGTCCCTGGAAGAGATGCATGCAAATTAGAAGAGGCTATGAGAAAGCATTTACCAGAACTTTTTGAAGAACAGCCTGACTTGCTTCATAAGCTGGTCACTCAGCTTTCTCCTTCTATCCTTAAGTCTAAAGGAGTACCAGTTTATAGGTGTGTCCAAAACCCTGGGGACTTTGTTCTGACATTTCCTCGAGCCTACCACTCTGGGTTCAATTGTGGTTTCAACTGTGCTGAGGCTGTTAATGTAGCTCCTGTTGACTGGCTGCCCCATGGGCATATTGCTATAGAGTTGTACCAGGAACAGGGGCGCAAGACTTCTATATCACATGATAAGCTGTTGCTTGGGGCTGCAAGGGAAGCAGTTCGAGCTCAATGGGAGCTTAATTTGCTAAAGAAGAATACTTTGGATAATCTACGATGGAAGGACGTCTGTGGAAAGGATGGCTTTTTGGCCAAAGCACTTAAGATGCGTGTTGAGATGGAACGAGCACGAAGAGAATTTCTCTGCAGTTCTCTACAGGCATTAAAAATGGAGAGTACGTTTGATGCTACGGATGAAAGGGAATGTAACATATGCTTTTTTGATTTACACCTATCTGCAGCTGGCTGTCGCTGTTCCCCAGATAGATATGCTTGCTTGGATCATGCAAAGCAGCTTTGTTCATGCTCTTGGGATTCCAGATTTTTTCTCTTTCGGTATGATGTTACTGAACTAAATATTCTGGTGGAGGCATTGGAAGGAAAATTAAGTGCAATCTACAGATGGGCAAAATCAGATCTTGGGCTGGCGCTATCATATGATGTTTCATCAGGCAAGGAAACAATACTTAAAGAATTGAAATCACATTCATCCAGTTTGTCTCATTCTTCCAGGGCCACTTTAAATAAAGAGATGGCTTTGCATCCACCAAATAAATATATTGATGATTCTCAATTGATTGACGTCCCAATAGAGAATCAAGCAAATAGCAAAGATCAGAGCTATTTTCAACAGAGAAAATCAGCTGAAGCTATTTCATTTTTGAGTTCAACGAAGGAGTTGCTAACATTTAACAGCTCAAAACCTACATCTGATATTCCTAATCATAAGATATGTGTTAGTAAGGAAGAATCTGTCATTTGCGGCTCGAAGATGAAAACACCTGGTTGTCAATTGTCTCAGGAGGATACATCGTATGCTTTATCTACTCTAGCTCAACAAGGAGGTGAGAAAAGTTCACTTTACAGACATAACAACGTTATACTTCTTAGTGACGATGAAGAAGACGAGAAGATGTCTGATTCAAATAGAAGGAAGGAACTTTCTTCTATGCTTGTAGGTCCTGGAGATAAGTCAAGCCCATTTAATAATATAGAAAGTACAAACTTGACCATTTCTGTGACAGATACTGCTGTGATGGGTGAAAGGGATGCCATGACATTACCCCATGAAAATACGAGTTCTGATTCAATTCCATCTTTGCGTGTGAAACAAGAATGTCATGAATACACAGGAACAGTTCCAGCCTCTACCCCACTAGATCTTTCTTGTCATATTGGTCTTCCAAGTGCACAATGTGCTAAAAATATTTCAGCTCCTTCAAAAGTAGAAGCAAGTGATCATTGTTTGGAAAGTTTGGAGATGTCTCCTCTGAACCTACAACTTTCTGGCACTAAGGTTAAGACCGAAGATAATCACGAAAAATTCGGAGGATGTTCCACTTCTAATGTAGCAGACAATGCGAGAGCTGTTAATGGGAACTTTTCTTGCGGTCCAAACAATTTTCGACAGAAAGGTCCTCGAATAGCAAAGGTTGTCCGGCGCATCAACTGCAATGTTGAACCATTAGAATTTGGGGTTGTGCTTTCTGGAAAGTCTTGGTGTAGCAGTCAGGCTATATTTCCAAAGGGATTTAGAAGCCGGGTTAGATACATAAATGTCTCAGATCCATCCAGTTTAGAGCCACGTATGTTTGTTTTTCAGAAGTTGCTCCTTTTGACGTGTAATGTTGTGAGAATTGATTGCGCTTTTATCCCAGTTTCCTTAGAAAGTTGTCCAAGTGAGGTCTTCATCCATATGTCAGCTGCAAGATGCTGGGAGCTCGTCAGAGAGAAAGTGAATCAAGAAATTGCCAAGCAACATAAGCTGGGAAGAAAGGGCCTTCCTCCTTTACAGCCCCCGGGTAGCCTTGATGGCTTAGAAATGTTTGGGTTTTCTTCACCAGCAATAGTGCAGGCTATTGAGGCGCTGGATCGAAGCCGAGTGTGTAATGAATATTGGGACTCACGGCCGTACTCCCGTCCTTTAGGACAGATTTCACAATCATGCCAAAGCAGTGTTAGTGGTGGCATTGGTCAAGGTGTTCTCGTGAATAAGCACATTCCCGTTGATGTTGTTGCAGTATTAAGGAGCCTATGTAAAAAGGCTAATGCAGAAGAATTGAACTCGTTGTACAGCATTCTTAGTGAAAGTAGGCCACAGGCTGACAGGAGCCAAATTGCGCAATTTCTTAAAGAAGAGATTCACAAATCACAACCACCCTAG 3903 0.4148 MAAIVCEVLLNIVFAGSFSGSSENPQTLRLSLHKEHKPGILLLIAFVHEVMMGTELMRICVKEDNDDFPSVPPGFESYTSFSLKRVENNEKQDDKNMISCSASTSASESPSTQVENDVQVRETAKVPRSLRRRPWINYGQHENHSEEDSDWLVFLEESSVDVQIAVIAKRWRPEDARRPNIEDAPVFYPTEEEFQDTLKYISSIRSRAEPYGICRIVPPSSWKPPCPLKEKSKWEGSKFSTRVQRIDKLQNRDSMRKMSRVQSNMKRKRRRCTRMGVDNSTRRGPNTAFCEVERFGFEPGPEFTLETFQRYAEDFQLQYFRKNENVSHLGGNTTILNGTSEPSVESIEGEYWRMVESPTEEIEVLYGADLETGIFGSGFPSKSSQLASASHEQYIKSGWNLNNFARLPGSLLSYESSDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKLWYGVPGRDACKLEEAMRKHLPELFEEQPDLLHKLVTQLSPSILKSKGVPVYRCVQNPGDFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGHIAIELYQEQGRKTSISHDKLLLGAAREAVRAQWELNLLKKNTLDNLRWKDVCGKDGFLAKALKMRVEMERARREFLCSSLQALKMESTFDATDERECNICFFDLHLSAAGCRCSPDRYACLDHAKQLCSCSWDSRFFLFRYDVTELNILVEALEGKLSAIYRWAKSDLGLALSYDVSSGKETILKELKSHSSSLSHSSRATLNKEMALHPPNKYIDDSQLIDVPIENQANSKDQSYFQQRKSAEAISFLSSTKELLTFNSSKPTSDIPNHKICVSKEESVICGSKMKTPGCQLSQEDTSYALSTLAQQGGEKSSLYRHNNVILLSDDEEDEKMSDSNRRKELSSMLVGPGDKSSPFNNIESTNLTISVTDTAVMGERDAMTLPHENTSSDSIPSLRVKQECHEYTGTVPASTPLDLSCHIGLPSAQCAKNISAPSKVEASDHCLESLEMSPLNLQLSGTKVKTEDNHEKFGGCSTSNVADNARAVNGNFSCGPNNFRQKGPRIAKVVRRINCNVEPLEFGVVLSGKSWCSSQAIFPKGFRSRVRYINVSDPSSLEPRMFVFQKLLLLTCNVVRIDCAFIPVSLESCPSEVFIHMSAARCWELVREKVNQEIAKQHKLGRKGLPPLQPPGSLDGLEMFGFSSPAIVQAIEALDRSRVCNEYWDSRPYSRPLGQISQSCQSSVSGGIGQGVLVNKHIPVDVVAVLRSLCKKANAEELNSLYSILSESRPQADRSQIAQFLKEEIHKSQPP 1300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02290 1300 Pfam JmjC domain, hydroxylase 426 542 IPR003347 -
Vimu3g02290 1300 SMART cupin_9 396 559 IPR003347 -
Vimu3g02290 1300 MobiDBLite consensus disorder prediction 95 119 - -
Vimu3g02290 1300 SMART JmjN_1 183 224 IPR003349 -
Vimu3g02290 1300 MobiDBLite consensus disorder prediction 879 911 - -
Vimu3g02290 1300 Pfam F/Y rich C-terminus 1133 1212 IPR003889 GO:0005634
Vimu3g02290 1300 PANTHER LYSINE-SPECIFIC DEMETHYLASE 177 1097 - -
Vimu3g02290 1300 Gene3D Cupin 169 543 - -
Vimu3g02290 1300 Pfam C5HC2 zinc finger 649 699 IPR004198 -
Vimu3g02290 1300 SUPERFAMILY Clavaminate synthase-like 394 586 - -
Vimu3g02290 1300 ProSiteProfiles FYR domain FYRC motif profile. 1116 1216 IPR003889 GO:0005634
Vimu3g02290 1300 MobiDBLite consensus disorder prediction 253 280 - -
Vimu3g02290 1300 ProSiteProfiles JmjC domain profile. 396 559 IPR003347 -
Vimu3g02290 1300 ProSiteProfiles JmjN domain profile. 184 225 IPR003349 -
Vimu3g02290 1300 SMART fyrc_3 1133 1224 IPR003889 GO:0005634
Vimu3g02290 1300 MobiDBLite consensus disorder prediction 92 123 - -
Vimu3g02290 1300 Pfam jmjN domain 185 218 IPR003349 -
Vimu3g02290 1300 Gene3D - 1065 1210 - -
Vimu3g02290 1300 ProSiteProfiles FYR domain FYRN motif profile. 1058 1121 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02290 Vimu-Chr3 37490078 37499694 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02290 52 1295 JUMONJI Transcription Factor Family AT1G08620 52.713 0.0 1177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vimu3g02290 JmjC 7.3e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02290 K11446 - gmx:100800271 2107.03