Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02284 CATTCATCCAATTCCAATCATGACATAAAAGTGAAGTTTCCATTTGATCTTAATGCTGAATTTGATGAGGAGGATTCAATTTCTCGCACTGAGGAAGCACGTCACAAAGTTGTTGAAACCATTCCAACTTTACCTTGTACTCATTCGGAGCTCACACCACAAGATGTTCCTCCTACAGACATGGACAATGAAGATAGAGCAAGTGTTGTCGAGGGAGGAACAGCTACCTCTGAAACCAGGGCCTACTACAAATGCACAAGTTCTGGGTGTTCTGTAAGGAAGCACGTGGAACGAGATTCGCGCAACAGAAAGAACGTAATCACTACTTACGAGGGAAAACACAATCATGAACAACCATCCCCTAAGAACCCTAACGAGAAACATTATGAAGAAGAAGAAGACGATGAAGATGAAGAAGATGACACAGAAGAACTTGCTACTGCTGCATCCAATGCTCTATGGAATTTTAGATTATCTGAGAGTATGAATTTTCTCAACACTCCACACCCTGCACAACATCGACTTCACACTCTTCAACTCTTTCGTAATGATACAAACCCTGGATTTGCCTACGCTGGGCCATCTGTTTGGCCTTTTGAAAGTTTCAACATGAATATTACGTCTTCTTCTTACACCACTCAAATGCATTATGCTTCTTTCTTGAACAGTACAAACACCATGCCTTACCGTTTCTATGGACTTGATCTTAACCGTTTTGCTGCCCCCCAAACTGAGTTTCCAATGCCACCACCCTTTAACGTTCCTTCTTCTTCTCAAGTCTTTTCTATTGGCTCCAGTTCAGTCTTTCCTTTAAGGGGTGCAATATATCGCAGACTGTAA 840 0.419 HSSNSNHDIKVKFPFDLNAEFDEEDSISRTEEARHKVVETIPTLPCTHSELTPQDVPPTDMDNEDRASVVEGGTATSETRAYYKCTSSGCSVRKHVERDSRNRKNVITTYEGKHNHEQPSPKNPNEKHYEEEEDDEDEEDDTEELATAASNALWNFRLSESMNFLNTPHPAQHRLHTLQLFRNDTNPGFAYAGPSVWPFESFNMNITSSSYTTQMHYASFLNSTNTMPYRFYGLDLNRFAAPQTEFPMPPPFNVPSSSQVFSIGSSSVFPLRGAIYRRL 279
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02284 279 SUPERFAMILY WRKY DNA-binding domain 78 119 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu3g02284 279 Gene3D WRKY domain 69 120 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu3g02284 279 SMART WRKY_cls 74 118 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu3g02284 279 MobiDBLite consensus disorder prediction 130 145 - -
Vimu3g02284 279 MobiDBLite consensus disorder prediction 109 145 - -
Vimu3g02284 279 MobiDBLite consensus disorder prediction 109 129 - -
Vimu3g02284 279 MobiDBLite consensus disorder prediction 41 75 - -
Vimu3g02284 279 Pfam WRKY DNA -binding domain 77 117 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu3g02284 279 ProSiteProfiles WRKY domain profile. 80 119 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu3g02284 279 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 79 139 IPR044810 GO:0003700
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vimu3g02284 Vimu-Chr3 37388035 37389704 Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02284 80 122 WRKY Transcription Factor Family AT5G56270 67.442 5.56e-14 70.1
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu3g02284 WRKY 6.3e-12 CL0274
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02284 K18835 - vun:114191352 324.709