Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02282 ATGTTTTGTAGGGCCTACTACAAATGCACAAGTGTTGGATGTTCAGTAAAGAAGCACGTGGAACGTGATTCGCGTAACCAAAAAAACTTGATTAGTACTTATGAGGGAAGACACAATCACGAACAACCAAACCCTAGCAAAGAATATATACATGATGAAGAAGATGAACAACTTGCTGCTGTTGCTGCAGCCAATGCCCTATTGACTTTTGGATCACCTGGAAGTACTAGGAACTTTTTCAATACCCCAAACCTTCCAGAACCTCCAGTTCACACTCTCCAACTACTTCCTAATCACACAAATCCTGAATTTTTCAATATGTTCATCAGATCCAACCCTTTTGGAAGTTTCAACTATAACATGAATTTTGGGTCTTCCTACACTCCCCCAATGCATTACTCTTCTTTCTTGAATAATGTCATTACCATGCCTTTTGGACTTAACCTTGCTCCTTATGTTCCACCTCCATTTAACATTCCTTTTTCTTTTGAAGGTTTTTCTCAGGATTGGATGAGTGCTAATGGGTCCAGTTCAGTGTTTCGTTACTGA 549 0.3953 MFCRAYYKCTSVGCSVKKHVERDSRNQKNLISTYEGRHNHEQPNPSKEYIHDEEDEQLAAVAAANALLTFGSPGSTRNFFNTPNLPEPPVHTLQLLPNHTNPEFFNMFIRSNPFGSFNYNMNFGSSYTPPMHYSSFLNNVITMPFGLNLAPYVPPPFNIPFSFEGFSQDWMSANGSSSVFRY 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02282 182 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 3 47 IPR044810 GO:0003700
Vimu3g02282 182 Gene3D WRKY domain 1 44 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu3g02282 182 SMART WRKY_cls 1 42 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu3g02282 182 SUPERFAMILY WRKY DNA-binding domain 2 43 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu3g02282 182 Pfam WRKY DNA -binding domain 2 41 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu3g02282 182 ProSiteProfiles WRKY domain profile. 4 43 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02282 Vimu-Chr3 37381712 37382260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02282 4 124 WRKY Transcription Factor Family AT4G26640 32.283 7.46e-13 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu3g02282 WRKY 4.1e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02282 K18835 - var:108323080 336.265