Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02281 ATGGAGGAAGTGGAGATAACAGAGGAAGAAGACGAAGTTGTGGTTGCTCCAACTAACTTTTCAATGGTGGAAGAGGGTATTTTTCGCAGCAGTTTCCCTCGATCTTCCAATTTCTCTTTTCTTGAAACTCTGAATCTTCGTTCCGTCGTATATTTGTGCCCTGAACCCTATCCACAGCAAAATCTACAGTTTCTTCAATCACAAAATATCAAGTTCTTCCACTTTGGTATTGAAGGCAAAACGGATCTTTCTGTGCCTGCCGTTAAGGATTTGATCTTGGAGGCCGTCAAAGTTTTGATTGACGTGAGAAATCACCCAGTTCTAGTCCACTGTAATCAAGGAAAGCATCGAACTGGCTGTGTTGTTGGATGCTTCAGAAAACTGCAGAGTTGGTGTTTATCTTCTGTGTTTGAGGAGTACAAGAAATTTGCTGGTGCTAAATCCAGAACAACTGATTTAAGTTTCATAGAAACGGTTGATCTCTTTAACCTGAGAAAGTGTCTTAACAGCATCATATACCAATACTTAGGATATTCTTCAAAGAAACGCAAGTTGCTGTACAGAGATGATAATTCACTCAAGTTCCACTTGACATCAGTTTAG 603 0.3997 MEEVEITEEEDEVVVAPTNFSMVEEGIFRSSFPRSSNFSFLETLNLRSVVYLCPEPYPQQNLQFLQSQNIKFFHFGIEGKTDLSVPAVKDLILEAVKVLIDVRNHPVLVHCNQGKHRTGCVVGCFRKLQSWCLSSVFEEYKKFAGAKSRTTDLSFIETVDLFNLRKCLNSIIYQYLGYSSKKRKLLYRDDNSLKFHLTSV 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02281 200 FunFam probable tyrosine-protein phosphatase At1g05000 13 163 - -
Vimu3g02281 200 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 90 122 IPR000387 GO:0016311|GO:0016791
Vimu3g02281 200 Gene3D Protein tyrosine phosphatase superfamily 14 162 IPR029021 -
Vimu3g02281 200 ProSitePatterns Tyrosine specific protein phosphatases active site. 109 119 IPR016130 GO:0016311|GO:0016791
Vimu3g02281 200 PANTHER TYROSINE-PROTEIN PHOSPHATASE 10 173 - -
Vimu3g02281 200 PRINTS Plant and fungal dual specificity phosphatase signature 70 84 IPR020428 GO:0016791
Vimu3g02281 200 PRINTS Plant and fungal dual specificity phosphatase signature 14 31 IPR020428 GO:0016791
Vimu3g02281 200 PRINTS Plant and fungal dual specificity phosphatase signature 51 64 IPR020428 GO:0016791
Vimu3g02281 200 PRINTS Plant and fungal dual specificity phosphatase signature 87 101 IPR020428 GO:0016791
Vimu3g02281 200 Pfam Tyrosine phosphatase family 14 160 IPR004861 -
Vimu3g02281 200 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 15 157 IPR029021 -
Vimu3g02281 200 ProSiteProfiles Dual specificity protein phosphatase domain profile. 19 168 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02281 Vimu-Chr3 37379937 37380999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02281 4 191 Protein tyrosine phosphatase (PTP) family AT3G02800 62.234 1.74e-93 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02281 K18045 - gmx:100808199 334.724