Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02280 ATGGAGAAGAAGAAGCTCAACGTCATCATCCCTAATCCTCAACCTCATGGAATCATTCCACGCCGCAATTCCCCTATCTCTCAAGGACAAGGTTTGGTATTTGTAGCCATTGTGTGCATTGATGATGTGGCTTCAGTTTCGCTTACATCATGCTGTTCACGCGTGTTTGATGTTGTTTCAGATTCACTGTGGATGATGAATTTGAGGAGTGGCGAAACAATGGATTCTGGAGCTTATCCGGAGCGTCCAGGGGAGCCAGACTGTTCGTATTACATCAGAACTGGACTCTGTAGATTTGGTGCAACGTGTCGATTTAATCATCCTCCTAACAGGAAGCTGTACTATCTGAAGACAGGAACTTGCAAATTTGGCGCCACATGCAAATTTCATCATCCTAAAGATCAGGCTGGGATTGCTGGAAGAGTTGCCTTAAATACTTTAGGCTATCCGCTCCGACCTAATGATCCTGAATGCACTTATTATTTGAGAACAGGACAATGCAAATTTGGAAACACTTGCAAATTCCACCATCCTCAACCGAGTAATATGATGCTTTCATTACAGGATTCTTCTGTTTATCCTACTGTCCATTCTCCAACTACACCAGGTCAGCAGTCGTATGCAGGAGGAATTACAAATTGGTCAAGGGCACCATACACCCCAAGTCTTCGCTGGCAGGGTCCTTCAAGTTATGCACCCTTAATTCTTCCTCAGGGAGTGGTTTCGGTGCCTGGGTGGAGTGCATATGGTGGTCAAGTGGGATCAATCTCTACTTCAGACAGTCATCAGCAAGCAATGAGAAATGGTCAAACATATGGAACTTCTCGCCAAGGTGAGCTAGCAAACGCAGGATCACATGGAGCATATTCTGAATTCCGTTCTGGCACTGTTCCAGTAGGGTTTTATGCATTGCAGAGGGAAAACATATTTCCTGAGAGACCTGGCCAGCCTGAATGCCAATTCTACATGAAGACAGGAGATTGTAAGTTTGGCGCAGTCTGTCGGTTCCACCACCCAAGCGAAAGGCTAATTCCTGCTCCTGACTGTGTCTTGAGTCCCATGGGCCTTCCTTTACGTCCGGGAGAACCTTTGTGTGTCTTCTATTCACGTTATGGCATATGCAAATTTGGCCCAAGTTGCAAGTTTGACCACCCAATGGGAATTTTCACCTATAATATCTCTTCATCGCCTTCAGCTGATGTCCCGAGCAGGCATCTGCTACGATCTTCATCAGGAACTGCTGCATTAAATTTATCTTCGGAAGGACTTGGTGAATCGAGCTCAGCAACGCCCAGGCGGCTTTCATTATCAGAGACAAGACAGATACCATCTGGTGATGATGACATTGATGATGATGGATGA 1362 0.4574 MEKKKLNVIIPNPQPHGIIPRRNSPISQGQGLVFVAIVCIDDVASVSLTSCCSRVFDVVSDSLWMMNLRSGETMDSGAYPERPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLYYLKTGTCKFGATCKFHHPKDQAGIAGRVALNTLGYPLRPNDPECTYYLRTGQCKFGNTCKFHHPQPSNMMLSLQDSSVYPTVHSPTTPGQQSYAGGITNWSRAPYTPSLRWQGPSSYAPLILPQGVVSVPGWSAYGGQVGSISTSDSHQQAMRNGQTYGTSRQGELANAGSHGAYSEFRSGTVPVGFYALQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPSERLIPAPDCVLSPMGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFTYNISSSPSADVPSRHLLRSSSGTAALNLSSEGLGESSSATPRRLSLSETRQIPSGDDDIDDDG 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02280 453 SUPERFAMILY CCCH zinc finger 156 180 IPR036855 GO:0046872
Vimu3g02280 453 Gene3D - 80 135 - -
Vimu3g02280 453 Gene3D - 311 396 - -
Vimu3g02280 453 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 114 133 IPR000571 GO:0046872
Vimu3g02280 453 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 315 339 IPR000571 GO:0046872
Vimu3g02280 453 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 156 179 IPR000571 GO:0046872
Vimu3g02280 453 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 361 386 IPR000571 GO:0046872
Vimu3g02280 453 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 109 IPR000571 GO:0046872
Vimu3g02280 453 SUPERFAMILY CCCH zinc finger 317 342 IPR036855 GO:0046872
Vimu3g02280 453 MobiDBLite consensus disorder prediction 417 442 - -
Vimu3g02280 453 PANTHER PROTEIN PHOSPHATASE RELATED 72 411 - -
Vimu3g02280 453 ProSiteProfiles Zinc finger C3H1-type profile. 152 180 IPR000571 GO:0046872
Vimu3g02280 453 SUPERFAMILY CCCH zinc finger 362 386 IPR036855 GO:0046872
Vimu3g02280 453 ProSiteProfiles Zinc finger C3H1-type profile. 359 387 IPR000571 GO:0046872
Vimu3g02280 453 MobiDBLite consensus disorder prediction 417 453 - -
Vimu3g02280 453 ProSiteProfiles Zinc finger C3H1-type profile. 114 134 IPR000571 GO:0046872
Vimu3g02280 453 ProSiteProfiles Zinc finger C3H1-type profile. 313 341 IPR000571 GO:0046872
Vimu3g02280 453 SMART c3hfinal6 359 386 IPR000571 GO:0046872
Vimu3g02280 453 SMART c3hfinal6 152 179 IPR000571 GO:0046872
Vimu3g02280 453 SMART c3hfinal6 110 133 IPR000571 GO:0046872
Vimu3g02280 453 SMART c3hfinal6 82 109 IPR000571 GO:0046872
Vimu3g02280 453 SMART c3hfinal6 313 340 IPR000571 GO:0046872
Vimu3g02280 453 ProSiteProfiles Zinc finger C3H1-type profile. 82 110 IPR000571 GO:0046872
Vimu3g02280 453 Gene3D - 136 189 - -
Vimu3g02280 453 SUPERFAMILY CCCH zinc finger 87 110 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02280 Vimu-Chr3 37370431 37375435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02280 63 452 C2H2 Transcription Factor Family AT3G02830 55.714 2.92e-152 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vimu3g02280 zf-CCCH 5.6e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02280 - - ccaj:109816515 733.791