Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02270 TACGCAAAAAGTGTTGAGAATCCCTTTGCCAGCATCAACTTTCAACAAACGTTTGTTGGAATAAAGCCAGCACCAGCTGCTGCATATTACACTTCAAGAGGTCCTTCACCAAGCTATCCGGGGATCTTAAAGCCTGATGTAATGGCACCTGGCTCAAATGTTCTGGCTGCTTTTGTTCCAAATAAAGCTTCAGCTAGAATTGGCACAAATGTGTTTCTCTCTAGCGACTACAATTTTTTGTCTGGAACATCCATGGCATGTCCTCATGCATCTGGTGTTGCTGCTCTTCTAAAAGCAGCACACCCTGATTGGAGTGCAGCTGCTATAAGATCTGCACTGGTCACCACTGCCAACCCTTTTGACAACACTCAAAGTCCAATTAGGGATAATGGTAACCCATTGCAATATGCTTCTCCTCTTGCCATGGGAGCTGGTGAGATTGATCCTAACAAAGCACTTGATCCAGGTTTCATATATGATGCCACC 486 0.4465 YAKSVENPFASINFQQTFVGIKPAPAAAYYTSRGPSPSYPGILKPDVMAPGSNVLAAFVPNKASARIGTNVFLSSDYNFLSGTSMACPHASGVAALLKAAHPDWSAAAIRSALVTTANPFDNTQSPIRDNGNPLQYASPLAMGAGEIDPNKALDPGFIYDAT 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02270 162 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 1 161 IPR045051 -
Vimu3g02270 162 SUPERFAMILY Subtilisin-like 24 156 IPR036852 GO:0004252|GO:0006508
Vimu3g02270 162 ProSitePatterns Serine proteases, subtilase family, serine active site. 82 92 IPR023828 -
Vimu3g02270 162 Gene3D Peptidase S8/S53 domain 20 162 IPR036852 GO:0004252|GO:0006508
Vimu3g02270 162 Gene3D - 1 19 - -
Vimu3g02270 162 Pfam Subtilase family 23 121 IPR000209 GO:0006508|GO:0008236
Vimu3g02270 162 ProSiteProfiles Serine proteases, subtilase domain profile. 1 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02270 Vimu-Chr3 37302147 37302636 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02270 7 162 Subtilisin-like Serine Gene Family AT3G14240 53.165 1.22e-46 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02270 - - gmx:100806072 313.538