Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02263 ATGAATTGCTTCCCTTGTTGTGCAACTAAGAAAAGCCTAAGCAAGAGAGAACACGATGCTCCACCATCAGCACCCGAACCTGCACCTGCACCAGCAGCACCAGCACCAGCACCAGCGGCACCAGCGGCACCAGCGGCACCAGCAGCAGAAATGAAGAAACAAAATTCCGATGATCGAATCTCAGTTGATCCTGAAAATATTAAGGTAAAGGCTTTCACGTTCCGTGAGCTAGCAACAGCAACAAAGAATTTCCGACAGGATTGCCTGTTGGATGAAGGATGTTTCGGGAGAGTATACAAAGGAATAATTCCTGCCACCGGCCAGGTCGTGGCCGTGAAGCAACTCGATCGAAATGGGATCGGTAAGGAAATGCTGACTGCTGTTTCTGATCTATGTATGTTGCAGCATGAGAATCTGGTAAATCTCATTGGTTATTGTACCGATGGTGATCAACGTCTTTTGGTTTACGAGTTGTTTTCTGGGCGCACTCTTGAAAACCGTCTTTTTGAGAATAAAGAGGATGAAGCACCATTAAACTGGTATGACAGAATGAAAATACTAGCGGGTGCTTCAAAAGGGCTAGAGTATTTACATGAGAGTTCGGACCCTCCAGTTATATTCAAGGATTTGAAAGCGTCGAGCATCTTGGTGGACAATGATTTCAAAGCAACCCCCTTGTTCAGGGACCCGAAGAGATATCCAGATATGGCGGATCCGGTTCTTAAAAAGAATTTCCCAGATAAAGATCTGAATCAAGTTGTTGCAATAGCATCCATGTGCTTACAGGAGGAAGCAGAAGCTCGACCTTTTATCAGTGACGTTGTAACTGCTCTCAGTTTTCTTTCTGCTGCTCCTGTTGCACCACCCCGAAAGAGTAGTGCTGGTGAAAGCGAGAGTGGATCAGTATCCAGAAAGGGGAGCCGTAGATCATCAGTAGATACTGATGGCCGACTTCCACCGGTTTCCTCTAAAAATAGTCGCAAAGGCAGCAAAAAATCTTCACTGAAACTGTTAAGCCAGAAGATAAGCCAGAAATCTTCTGAGGAAGATTTAGGACAGAAGAGCAGTAAAAAGTCCTCCAAGAGCAGCAGAAAATCTTCCCTGAGAGGTTTAAGCCATAAGAGCAGTAAAAAATCTTCTAGCAGAAAGAGTAGCAAAGAATCGGAGGATGGAAGCGTTTCCTCAAGCTGCCGTAGCAGCAGTTTGGCATCAGATGATGAAAGGTCTGTGTCAGCTCGTAGCAGCATGAGGCTATCACAAGCGAGTGATCAATCTGAGTCCAACTACAGCAGCAGAAGGACAGAAGATGCGGACCATAACCTACTAGACCGTGCAAGCACCATGGAATCTGATGTGGGAAGTGGTCACCCTTTTGACCAAACTAGCAGCAGTGGATCAAGCGTTTACTCTCGATAA 1416 0.459 MNCFPCCATKKSLSKREHDAPPSAPEPAPAPAAPAPAPAAPAAPAAPAAEMKKQNSDDRISVDPENIKVKAFTFRELATATKNFRQDCLLDEGCFGRVYKGIIPATGQVVAVKQLDRNGIGKEMLTAVSDLCMLQHENLVNLIGYCTDGDQRLLVYELFSGRTLENRLFENKEDEAPLNWYDRMKILAGASKGLEYLHESSDPPVIFKDLKASSILVDNDFKATPLFRDPKRYPDMADPVLKKNFPDKDLNQVVAIASMCLQEEAEARPFISDVVTALSFLSAAPVAPPRKSSAGESESGSVSRKGSRRSSVDTDGRLPPVSSKNSRKGSKKSSLKLLSQKISQKSSEEDLGQKSSKKSSKSSRKSSLRGLSHKSSKKSSSRKSSKESEDGSVSSSCRSSSLASDDERSVSARSSMRLSQASDQSESNYSSRRTEDADHNLLDRASTMESDVGSGHPFDQTSSSGSSVYSR 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02263 471 MobiDBLite consensus disorder prediction 390 428 - -
Vimu3g02263 471 Pfam Protein tyrosine and serine/threonine kinase 89 220 IPR001245 GO:0004672|GO:0006468
Vimu3g02263 471 Gene3D Transferase(Phosphotransferase) domain 1 160 224 - -
Vimu3g02263 471 Gene3D Transferase(Phosphotransferase) domain 1 225 287 - -
Vimu3g02263 471 MobiDBLite consensus disorder prediction 429 445 - -
Vimu3g02263 471 MobiDBLite consensus disorder prediction 286 471 - -
Vimu3g02263 471 PANTHER OS07G0668900 PROTEIN 223 290 - -
Vimu3g02263 471 MobiDBLite consensus disorder prediction 23 43 - -
Vimu3g02263 471 ProSiteProfiles Protein kinase domain profile. 84 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02263 471 SUPERFAMILY Protein kinase-like (PK-like) 61 280 IPR011009 -
Vimu3g02263 471 Gene3D Phosphorylase Kinase; domain 1 45 158 - -
Vimu3g02263 471 MobiDBLite consensus disorder prediction 358 380 - -
Vimu3g02263 471 MobiDBLite consensus disorder prediction 11 62 - -
Vimu3g02263 471 MobiDBLite consensus disorder prediction 316 346 - -
Vimu3g02263 471 MobiDBLite consensus disorder prediction 453 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02263 Vimu-Chr3 37268403 37270552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02263 223 285 Glycoside Hydrolase AT3G07070 61.905 2.38e-20 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vimu3g02263 PK_Tyr_Ser-Thr 9.3e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02263 - - pvu:PHAVU_007G115500g 330.872