Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02261 ATGGCCAACACGGAGGCGGAGCTGAAGCAAAATTTAAAGGAATTGATCGAAAGTATCGTTGACGGTGATGATTACACCGTTCACACTGCGGACAATGCTATCCGTGCTCTTTCTGCGCTCAAAGATTTGAAGCGCCCCGCTTCTCCCTTACCAAACGTGGATCAATCACCCATTCCTCCACACTTTCGATGCCCTCTCTCCGGTCACTTTATGACAGATCCTGTTATCTTGATCGTTGGACAGACTTTTGATCGTCCATTAATCCAGAGATGGCTGAATGATATCCGCGGAGTTTACCCTCAGAGCCATGTTCTCAATCGCTGTTTGCTCGCTCCCAATACCTTGCTCCAAGGCATGATTTCAGAGTGGTGCAAAGACAACGGAATTGACCTGCCAAAGCCCGTTTCTGACGTTCACGACGAACAACTAACCGAGGCACACATACACCGTTTGCATTCTATGCTCTTGAAGCTGTCACTGTCAGTCTCTGAGCAGAAAGAAGCTGCAAAGGAGCTTCGTCAGTTAGCAAAAGGAATGTCCGTTCGAGCACTCTTTGGGACCACACAAATGATTAACATTTTGTTGCGTCCGTTATCATCCGAAGCTCCTACGGACCCTGAACTCCAAGATGATTTGGTCGCAGTTATTCTAAACCTCTCAGAACTCGACTCGAACAAGAGGTTGTTGGCAGAAAACGAAAAAGTCATTGCCTTTCTCATTGATTCGTTGAAATCCGGAGCAATTGAAACAAGAAGCAATGCAGCTGCAACTCTTTCCTCGATGTCATCTCTTGATTCGAACAAGGACATAATTGGAAGGTCTGGAGCTATAAAGTACTTGGTGGATTTACTTGAAGAGGGAGACCCATTAGCCATGAGAGAGGCTGGATCAGCCTTGTTCAAACTATGGTTTGCTCGTGAAAATATAGCGAGGACCGTGCGAGAAGGGGCAGTGCAGATTATTCTTGGGAAGCTCGTCGACCATATTCTTGTTGATGAGTTGTTAACAATGTTGGCACTTCTTGCTACACATAGTAGAGCAGTTGAAGCGTTGGTGAATCATGGCGGTGTCCGTCTCTTGCTTGATATCTTGAGGGAGAGCACAACAGAACGCATCAAGGAAAACGCTGCAGTAGTTCTACAACTAATCTGTTACCATAATAGAGAAAAAAGGGAGGAAATTAAAGAGGAAGAACTGGCCAACGGCACAATCTCAAATGTTGTTCAAAACGGGTCCACCAGGGCTAGAAGGAAAGCTATCTCCATCCTTAATCTACTTTGTATTAATCCAAACCCAAATCCAAACCCAAATCCAGATCCAAACCCAAACCCAAATCAGTGA 1341 0.4549 MANTEAELKQNLKELIESIVDGDDYTVHTADNAIRALSALKDLKRPASPLPNVDQSPIPPHFRCPLSGHFMTDPVILIVGQTFDRPLIQRWLNDIRGVYPQSHVLNRCLLAPNTLLQGMISEWCKDNGIDLPKPVSDVHDEQLTEAHIHRLHSMLLKLSLSVSEQKEAAKELRQLAKGMSVRALFGTTQMINILLRPLSSEAPTDPELQDDLVAVILNLSELDSNKRLLAENEKVIAFLIDSLKSGAIETRSNAAATLSSMSSLDSNKDIIGRSGAIKYLVDLLEEGDPLAMREAGSALFKLWFARENIARTVREGAVQIILGKLVDHILVDELLTMLALLATHSRAVEALVNHGGVRLLLDILRESTTERIKENAAVVLQLICYHNREKREEIKEEELANGTISNVVQNGSTRARRKAISILNLLCINPNPNPNPNPDPNPNPNQ 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02261 446 SMART arm_5 344 385 IPR000225 GO:0005515
Vimu3g02261 446 SMART arm_5 223 263 IPR000225 GO:0005515
Vimu3g02261 446 SMART arm_5 305 343 IPR000225 GO:0005515
Vimu3g02261 446 SMART arm_5 264 304 IPR000225 GO:0005515
Vimu3g02261 446 ProSiteProfiles U-box domain profile. 57 130 IPR003613 GO:0004842|GO:0016567
Vimu3g02261 446 SMART Ubox_2 61 123 IPR003613 GO:0004842|GO:0016567
Vimu3g02261 446 Gene3D - 329 436 IPR011989 -
Vimu3g02261 446 SUPERFAMILY ARM repeat 147 430 IPR016024 -
Vimu3g02261 446 Pfam U-box domain 58 127 IPR003613 GO:0004842|GO:0016567
Vimu3g02261 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 41 130 IPR013083 -
Vimu3g02261 446 PANTHER U BOX DOMAIN-CONTAINING 6 431 - -
Vimu3g02261 446 Gene3D - 153 328 IPR011989 -
Vimu3g02261 446 Pfam Armadillo/beta-catenin-like repeat 347 384 IPR000225 GO:0005515
Vimu3g02261 446 SUPERFAMILY RING/U-box 54 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02261 Vimu-Chr3 37256036 37257726 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02261 119 426 U-box Gene Family AT3G07360 48.580 3.84e-85 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02261 - - gmx:100806132 481.485