Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02244 ATGGCCAACCGCTGGTGGACCGGTTCCGTCGGTCTTGAGAACTCGGGTGACTCCATGAGGAAACCGGATCTGGGATTTTCCATGAACGAGAGTGCGGTGACTGCGAACCACGCAGGAGAAGAAGAGGAGGAAAAAGAAAACAGCGACGAACCCAAAGAGGGAGCTATTGACGTGACCAACACGCGCCGCCCAAGGGGTCGTCCACCGGGTTCCAAGAACAAGCCCAAACCACCGATATTCGTCACCCGAGACAGCCCCAACGCGATGCGAAGCCACGTCATGGAGATTGCTAGCGGTGCCGACATCACCGACTGCGTGGTCCAGTTTGCGCGGAGGCGCCAGCGCGGCGTGTCCATTCTCAGCGGCAGCGGGGCCGTCGTGAACGTTACTCTCCGCCAGCCCACTGCTCCGGGCGCCGTCATGGCTCTCCACGGCCGCTTCGATATCCTCTCCCTCACCGGCTCGTTTCTCCCTGGACCTTCCCCTCCCGGTGCGACCGGTCTCACCATCTATCTCGCAGGAGGTCAGGGACAGATAGTTGGGGGTGGGGTGGTGGGCCCACTGGTGGCGGCTGGTCCAGTTTTGATAATGGCGGCTACGTTTTCCAATGCAACATACGAGAGATTGCCCTTGGAGGAGGATGATCAGGAGCAGGGTGGTGGCGGCGGGTCTCCGCCGGGGATGGGAGGTGGTCCTGGCGAAGTGTCGTCTTCAATTTCGGTGTATAATAATAATGTTCCTCCGAATCTGGGTCTTCCAAACGGACAACAGGTGAACCATGAAGCTTATTCTTCTCCTTGGGGTCATGCTCCTCATGCCAGACCTCCTTTCTAA 834 0.5887 MANRWWTGSVGLENSGDSMRKPDLGFSMNESAVTANHAGEEEEEKENSDEPKEGAIDVTNTRRPRGRPPGSKNKPKPPIFVTRDSPNAMRSHVMEIASGADITDCVVQFARRRQRGVSILSGSGAVVNVTLRQPTAPGAVMALHGRFDILSLTGSFLPGPSPPGATGLTIYLAGGQGQIVGGGVVGPLVAAGPVLIMAATFSNATYERLPLEEDDQEQGGGGGSPPGMGGGPGEVSSSISVYNNNVPPNLGLPNGQQVNHEAYSSPWGHAPHARPPF 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02244 277 FunFam AT-hook motif nuclear-localized protein 89 216 - -
Vimu3g02244 277 PIRSF ESCAROLA 11 277 IPR014476 GO:0003680
Vimu3g02244 277 SUPERFAMILY AF0104/ALDC/Ptd012-like 86 215 - -
Vimu3g02244 277 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 31 268 IPR014476 GO:0003680
Vimu3g02244 277 MobiDBLite consensus disorder prediction 1 87 - -
Vimu3g02244 277 MobiDBLite consensus disorder prediction 213 277 - -
Vimu3g02244 277 MobiDBLite consensus disorder prediction 236 263 - -
Vimu3g02244 277 CDD DUF296 90 173 IPR005175 -
Vimu3g02244 277 Gene3D - 89 218 - -
Vimu3g02244 277 Pfam Plants and Prokaryotes Conserved (PCC) domain 90 203 IPR005175 -
Vimu3g02244 277 ProSiteProfiles PPC domain profile profile. 86 226 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02244 Vimu-Chr3 37120950 37121783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02244 1 277 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 54.698 1.68e-88 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02244 - - gmx:100797639 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02244 3 37120950 37121783 Vimu3g02244 3 37120950 37121783 ECH