Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02239 ATGGCCAACACGGAGGCGGAGCTGAAGCAAAATTTAAAGGAATTGATCGAAAGTATCGTTGACGGTGATGATTACACCGTTCACACTGCGGACAATGCTATTCGTGCTCTTTCTGCGCTCAAAGATTTGAAGCGTCCCGCTTCTCCCATTCCTCCACACTTTCGATGCCCTCTCTCCGGTAACTTGATGACAGATCCTGTTATCTTGGCCACTGGACAGACTTTTGATCGTCCATTAATCCAGAGATGGCTGAATGATATCCTCCGAATTTACCCTCAGAGCCATGTTGTTCTCAATCGCTGTTTGCTCGCTCCCAATGTCTTGCTTCAAGGCATGATTTCAGAGTGGTGCAAAGACAGGGGAATTAACCTGCCAAAGCCCGTCTTTGACGTTCACCACGAACAACTAACCGAGGCACACATACACCGTTTGCATCCTCTGCTCTTCAAGCTGTCACTGTCAGTCTCTGAGCAGAAAGAAGCTGCAAAGGAGCTTCGTCAGTTAGCAAAAATAATGTCCGTTCGAGCACTCTTTGGGACCAGACAAATGATTAACATTTTGTTGCGTCCGTTATCATCCGAAGCTCCTCTGGACCCTGAACTCCAAGATGATTTGATCGCAGCTATTCTGAACCTCTCAATACTCGACTCGAACAAGAGGTTGTTGGCAGAAAACGAAAAACTCATTGCCTTTCTCATTGATTCGTTGAAATCCGGAGCAGTTCAAACAAGAAGCATTGCAGCTGCAGCTCTTTCCTCGATGTCATCTCTTGATTCGAACAAGGACATAATTGGAAGGTCTGGAGCTATAAAGTACTTGGTGGATTTACTTGAAGAGGGAGACCCATTAGCCATGAGAGATGCTGGATCAGCCTTGTTCAGACTATGCTGTGCTCGTGAAAATATAGTGAGGACCGTGCGAGAAGGGGCAGTGCAGATTATTCTTGGGAAGCTCGTCAACCATATTCTTGTTGATGATCTTGTTGATCAGTTGGTATCAATGTTGGCACTTCTTGCTACACATACTATAGCAGTTGAAGCGTTGGTGAATCATGGCGGTGTCCGTTTCTTGCTTGATATCTTGAGGAAGAGCACAGTAGAACGCGTCAAGGAAAACGCTGCAGTAATTCTACATCTAATCTGTTACCATAATAGAGAAAAAAGGGAGGAAATTAAAGAGGAAGAACTGGCCAACCGCACAATCTCAAATGTTGTTCAAAACGGGTCCGCGACGGCTAAAAGGAAAGCTAAATCTATCCTTAACTGTCTTCGTATAGATAAGCCCACTTCTCAGAACACTCCAAATCCAGATCCAAATCCAAATCCAAATCCAGATCCAAACCCAAACCCAAATCCGTGA 1359 0.4511 MANTEAELKQNLKELIESIVDGDDYTVHTADNAIRALSALKDLKRPASPIPPHFRCPLSGNLMTDPVILATGQTFDRPLIQRWLNDILRIYPQSHVVLNRCLLAPNVLLQGMISEWCKDRGINLPKPVFDVHHEQLTEAHIHRLHPLLFKLSLSVSEQKEAAKELRQLAKIMSVRALFGTRQMINILLRPLSSEAPLDPELQDDLIAAILNLSILDSNKRLLAENEKLIAFLIDSLKSGAVQTRSIAAAALSSMSSLDSNKDIIGRSGAIKYLVDLLEEGDPLAMRDAGSALFRLCCARENIVRTVREGAVQIILGKLVNHILVDDLVDQLVSMLALLATHTIAVEALVNHGGVRFLLDILRKSTVERVKENAAVILHLICYHNREKREEIKEEELANRTISNVVQNGSATAKRKAKSILNCLRIDKPTSQNTPNPDPNPNPNPDPNPNPNP 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02239 452 PANTHER U BOX DOMAIN-CONTAINING 7 423 - -
Vimu3g02239 452 SMART arm_5 257 297 IPR000225 GO:0005515
Vimu3g02239 452 SMART arm_5 216 256 IPR000225 GO:0005515
Vimu3g02239 452 SMART arm_5 341 382 IPR000225 GO:0005515
Vimu3g02239 452 Pfam U-box domain 50 120 IPR003613 GO:0004842|GO:0016567
Vimu3g02239 452 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 123 IPR013083 -
Vimu3g02239 452 ProSiteProfiles U-box domain profile. 49 123 IPR003613 GO:0004842|GO:0016567
Vimu3g02239 452 MobiDBLite consensus disorder prediction 433 452 - -
Vimu3g02239 452 SUPERFAMILY ARM repeat 152 426 IPR016024 -
Vimu3g02239 452 SMART Ubox_2 53 116 IPR003613 GO:0004842|GO:0016567
Vimu3g02239 452 SUPERFAMILY RING/U-box 39 126 - -
Vimu3g02239 452 CDD RING-Ubox_PUB 51 86 IPR045210 -
Vimu3g02239 452 MobiDBLite consensus disorder prediction 425 452 - -
Vimu3g02239 452 Gene3D - 151 423 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02239 Vimu-Chr3 37104084 37105711 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02239 112 424 U-box Gene Family AT3G07360 47.188 4.83e-79 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02239 - - gmx:100806132 467.233