Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02236 ATGATTTCTTATTACCCTTTTCTTGATCTCTCAGGTGATGTACACGGTCAATATTCTGATCTTTTAAGGCTTTTTGAGTATGGTGGATTACCTCCTGAGGCTAACTACTTATTTTTGGGGGATTATGTGGATCGAGGGAAGCAGAGTTTGGAAACAATATGCCTTCTCCTAGCTTATAAAATAAAATATCCTGAGAACTTTTTTCTTTTGAGGGGTAACCATGAATGTGCATCTATTAACCGTATATATGGATTTTATGACGAGTGTAAAAGAAGGTTCAACGTAAGGTTATGGAAGACATTTACCGAATGCTTCAATTGCCTGCCTGTGGCAGCACTCATTGATGAAAAGATATTGTGCATGCATGGGGGCCTTTCTCCTGATTTACATAATTTGGATCAAATTAGAAATCTACTACGGCCCACTGATGTGCCTGATACAGGTTTGCTTTGTGATCTCCTCTGGTCAGATCCAAGCAAAGAGGTTCAGGGTTGGGGAATGAATGATAGGGGAGTTTCATATACATTTGGTGCTGATAAGGTCTCGGAGTTTCTTCAGAAACATGATTTGGATCTTATTTGTCGTGCTCATCAGGTGGTGGAGGATGGGTATGAGTTCTTTGCTAACCGACAGCTTGTAACAATATTTTCGGCACCTAATTATTGTGGGGAGTTTGACAATGCCGGTGCTATGATGAGTGTTGATGAGACACTAATGTGCTCTTTCCAAATATTGAAACCAGCTGATAAAAAATCAAAGCTCAACAGTACTACCACTACTAAGCCAGGAAACTCCCCAGCAGGTGTAAAGAGATTCACAAATAAGATTATCGTATTAATTGCCAAAATCTGCTTTGCTTCTTGTCTTCTATTCTTGAGATAG 882 0.3957 MISYYPFLDLSGDVHGQYSDLLRLFEYGGLPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKTFTECFNCLPVAALIDEKILCMHGGLSPDLHNLDQIRNLLRPTDVPDTGLLCDLLWSDPSKEVQGWGMNDRGVSYTFGADKVSEFLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKKSKLNSTTTTKPGNSPAGVKRFTNKIIVLIAKICFASCLLFLR 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02236 293 SMART pp2a_7 1 249 IPR006186 GO:0016787
Vimu3g02236 293 ProSitePatterns Serine/threonine specific protein phosphatases signature. 70 75 IPR006186 GO:0016787
Vimu3g02236 293 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 11 257 - -
Vimu3g02236 293 FunFam Serine/threonine-protein phosphatase 3 258 - -
Vimu3g02236 293 SUPERFAMILY Metallo-dependent phosphatases 12 254 IPR029052 -
Vimu3g02236 293 PRINTS Serine/threonine phosphatase family signature 211 227 IPR006186 GO:0016787
Vimu3g02236 293 PRINTS Serine/threonine phosphatase family signature 7 34 IPR006186 GO:0016787
Vimu3g02236 293 PRINTS Serine/threonine phosphatase family signature 189 209 IPR006186 GO:0016787
Vimu3g02236 293 PRINTS Serine/threonine phosphatase family signature 36 63 IPR006186 GO:0016787
Vimu3g02236 293 PRINTS Serine/threonine phosphatase family signature 69 93 IPR006186 GO:0016787
Vimu3g02236 293 PRINTS Serine/threonine phosphatase family signature 132 159 IPR006186 GO:0016787
Vimu3g02236 293 PRINTS Serine/threonine phosphatase family signature 103 129 IPR006186 GO:0016787
Vimu3g02236 293 Gene3D - 8 258 IPR029052 -
Vimu3g02236 293 Pfam Calcineurin-like phosphoesterase 12 199 IPR004843 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02236 Vimu-Chr3 37084459 37085876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02236 12 195 Calmodulin-binding Proteins AT5G63870 31.963 2.22e-27 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02236 K06269 - gmx:100794578 529.635