Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02234 ATGTGCGAAGCGCTGAAGACGCAGTACCAGGTAAACGAGGAGATCGGTCGTGGACGCTTCGGAACCATCTTCCGCTGTTTCCACCCTCTCTCCAACGAACCCTACGCCTGCAAGCTCATCGACAAGTCTCTTCTTGCCGATTCCACTGACCGTGAGTGTCTCCAGAATGAACCTAAATTCATGACCCTTCTCTCTCCTCACCCTAACATCCTTCAAATCTTCGATGTCTTCGAGGACGACGATTATCTCTCCATCGTCATGGACCTCTGCCAGCCCCACACCCTCTTCGACCGCATCGTTAACGGCCCCATCCCCGAGACCCAGGCCGCCCTCCTCATCAAGAGCCTTCTCGAAGCCCTGGCCCACTGCCATCGCATGGGCGTCGCCCACCGCGACATCAAGCCCGACAATGTTCTTTTCGACTCCGCGGATAATCTCAAGCTCGCCGACTTCGGCTCGGCGGAGTGGTTCGGCGACGGGAGCACCATGAGTGGCGTGGTCGGGACTCCGTACTACGTGGCGCCGGAGGTTGTGATGGGAAGGGAGTATGATGAGAAAGTTGATGTGTGGAGCTGTGGTGTTATTTTGTATATAATGTTGGCAGGGATTCCCCCTTTCTATGGAGACTCTGCTGCCGAGATCTTTGAGGCTGTTGTTAGGGCTAACCTTCGCTTCCCTTCTAGAATCTTCCGGAATGTCTCCCCCGCCGCCAAGGATCTCCTCAGAAAAATGATCTGTCGAGACCCTTCTAGAAGGTTCTCAGCAGAACAAGCCTTGAGTAAGTTCATCACTTTCTGCAGAAGGAGTCTTCGTGTTCGTGTTTCTCGTTAA 831 0.5415 MCEALKTQYQVNEEIGRGRFGTIFRCFHPLSNEPYACKLIDKSLLADSTDRECLQNEPKFMTLLSPHPNILQIFDVFEDDDYLSIVMDLCQPHTLFDRIVNGPIPETQAALLIKSLLEALAHCHRMGVAHRDIKPDNVLFDSADNLKLADFGSAEWFGDGSTMSGVVGTPYYVAPEVVMGREYDEKVDVWSCGVILYIMLAGIPPFYGDSAAEIFEAVVRANLRFPSRIFRNVSPAAKDLLRKMICRDPSRRFSAEQALSKFITFCRRSLRVRVSR 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02234 276 FunFam Phosphoenolpyruvate carboxylase kinase 2 1 273 - -
Vimu3g02234 276 CDD STKc_CAMK 8 260 - -
Vimu3g02234 276 Pfam Protein kinase domain 9 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02234 276 SUPERFAMILY Protein kinase-like (PK-like) 6 260 IPR011009 -
Vimu3g02234 276 FunFam Phosphoenolpyruvate carboxylase kinase 1 1 91 - -
Vimu3g02234 276 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Vimu3g02234 276 SMART serkin_6 9 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02234 276 PANTHER SERINE/THREONINE-PROTEIN KINASE 6 263 - -
Vimu3g02234 276 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Vimu3g02234 276 ProSiteProfiles Protein kinase domain profile. 9 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02234 276 Gene3D Transferase(Phosphotransferase) domain 1 93 274 - -
Vimu3g02234 276 Gene3D Phosphorylase Kinase; domain 1 1 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02234 Vimu-Chr3 37064199 37065029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02234 2 259 EF-hand Containing Proteins AT2G38910 42.748 1.03e-68 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vimu3g02234 Pkinase 6.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02234 - K08794 gmx:548089 489.574