Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02214 ATGCAAAATGCAACAAGATTAAGAGGATCCAACACCATGAGAGCAACCACCAAAATGCAAACCCACCTGCTGTTCTTCTATTGTTACATTGGCCTCTCACTGACTTTTACTGAAGCTGCAGCAGATGGTGAACTGTCAAGTCTTCTCTCAATCAAAGCCACTCTCATTGACCCAATGAGGCATCTGAAGGATTGGCAAATTCCAAGCAATGTGTCACAATCAGGATCACCCCATTGTAACTGGACTGGAGTTGGTTGCAACTTTAAAGGCTATGTAGAGAGTCTTGACCTCTCCAACATGAACCTCAGCGGTCGTGTTTCGGACCACATTCAATCTCTTTCTAGTCTGTCTTATTTCAACATAAGCTGTAACAACTTTGCTTCATCACTGCCCAAGTCACTGTCCAACCTCACCTCTCTCGAGAATTTTGATGTGAGCCAGAACTACTTCACTGGCAGCTTCCCCATTGGTCTTGGAAGAGCTGCAGGCTTGAGATTAATCAATGCATCGAGCAATGATTTTTCTGGTTTTCTTCCTGAGGATATTGGAAATGCAACCTTGCTTGAGAGCCTTGATTTTCGAGGGAGCTACTTCGTGAGTCCAATCCCCAGGAGCTTTAAGAATTTGCAGAAACTCAAATTTCTGGGCCTTTCCGGCAATAACTTCACAGGGAGGATTCCAGGATATCTCGGTGATCTAACTTCTCTGGAGACATTGATTATCGGATACAATTTATTTGAAGGTGAGATCCCTGCAGAGTTTGGGAACCTGACTAGTCTTCAATACCTTGACTTGGCTGTAGGAAGTCTCAGTGGAGAAATTCCAGCGGAATTGGGTAAGCTGACAAAACTCAACACAGTTTACTTGTACCATAACAACTTCACAGGAAAAATTCCTCCTGAACTTGGAGACGTAACTTCACTGGCATTTTTGGACCTCTCTGACAATCAGATCTCCGGAGAGATTCCGGAAGAACTTGCTAAATTGGAAAACCTGAAGCTCTTAAATCTGATGACGAACAAACTAACTGGACGAGTACCAGAGAAGCTTGGTGAATTGAAAAATTTACAGGTGCTTGAGCTCTGGAAAAATTCCTTACATGGTCCTTTGCCACCAAACCTTGGGCAGAACTCTCCTTTACAGTGGTTGGATGTGTCCTCTAACGCACTATCTGGGGATATCCCTCCAGGTTTGTGTACAACTGGAAATCTCACTAAACTAATCCTCTTCAATAATTCCTTCACTGGCTCCATTCCAAGTGGACTTGCGAACTGTTTGTCTTTGGTACGTGTTCGGATTCAGAACAATCTTATTTCTGGAACTATTCCAGTTGGCTTTGGAAACCTCCTTGGCCTTCAACGGCTAGAATTCGCAAAGAACAACCTCACTGGGAAAATTCCCTCTGATATTACCTCATCCACATCGCTCTCTTTCCTTGATGTATCTTGGAACAACTTTGAGTCATCTCTTCCGTCAGATATTCTTTCTATTCCAACCCTTCAAACCTTCATTGCCTCTCATAACAATTTTGGAGGAGATATCCCAGATGAGTTCCAGGACTGTCCATCTCTCTCTGTATTGGACCTTTCAAACACTCATATTTCTGGCACAATCCCCGAAAGTATTGCTTCTTGTCAAAAATTAGTCAACCTTAACCTTCGAAATAACCACTTGACAGGAGAAATCCCAAAATCAATCACAAGCATGCCCACTTTATCTGTTCTTGATCTTTCCAACAACTCATTGACCGGTAGGATTCCTGACAACATTGGCAATTGCCCTGCTCTGGAATTGCTGAACTTATCCTATAACAAACTTGAGGGTCCAGTACCCTCAAATGGGATGTTGGTGACCATAAATCCTAACGATCTTATTGGCAATGAAGGTCTTTGTGGAGGCATTCTCCCTCCATGTTCTCCAAGTATGGCTGTGACAAGCCATCGAAGAAGCTCACATGTCAGACACATCATAATCGGTTTTGTGACTGGCATTTCAGTGATTTTAGCTTTTGGTGCAGCATACTTTGGTGGTAGATGTTTGTACAATAGATGGCACTTATATAACAACTTCTTCTATGATTGGTTCAAACAGAACAATGAAGATTGGCCCTGGAGACTAGTAGCATTCCAGAGGATCAGCTTCACTAGTAGTGAGATTCTGACTTGCATGAAGGAATCAAATGTTATAGGAATGGGGAGCACTGGTATCGTTTACAAAGCTGAAATCCATAGACCTCACGTAACCGTAGCAGTGAAGAAATTGTGGAGGTCACGAACAGACATAGAAGATGGAAATGATGTGTTGAGAGAAGTGGAACTCCTAGGGAGACTTAGGCACAGGAATATAGTAAGGCTGTTGGGGTATGTACACAACGAAAGAAATGTGATGATGGTTTACGAGTACATGCCTAACGGGAATCTTGGAACAGCACTACATGGTGAAGAATCTGCAAGGTTGCTTGTTGACTGGGTCTCAAGGTACAACATAGCTCTAGGAGTTGCACAAGGGCTTAACTATCTCCATCATGATTGCCACCCACCAGTTATTCACAGGGATATCAAGTCAAACAACATACTCCTTGACGCAAATTTAGAGGCGAGAATAGCAGACTTCGGGTTGGCAAGGATGATGATTCAAAAGAACGAGACAGTTTCCATGGTGGCTGGATCATATGGATACATCGCACCAGAATATGGATACACTCTGAAGGTTGACGAGAAGATTGACATATACAGTTATGGGGTGGTGCTTTTGGAGCTTCTAACTGGCAAAATGCCTTTAGACCCTTCGTTTGAAGAATCTATTGACATAGTCGAATGGATACGGAAGAAGAAAAGCAACAAATCCTTGTTAGAAGCACTGGATCCTGCCATAGCTAGTCAATGCAAACATGTCCAAGAAGAAATGTTGCTTGTACTCCGGATTGCACTTCTATGTACCGCAAAGCTTCCCAAGGAAAGACCACACATGAGAGACATAATCACAATGCTTGGTGAGGCAAAGCCAAGAAGGAAAAGTGTTTGCCATAATGGGGGTCAAGAAAGCAGTAGCATGGAAAAGTCCTCTGTCCTTACCACCTCCCCTGCCATAAGTCTTTTGTAG 3102 0.4313 MQNATRLRGSNTMRATTKMQTHLLFFYCYIGLSLTFTEAAADGELSSLLSIKATLIDPMRHLKDWQIPSNVSQSGSPHCNWTGVGCNFKGYVESLDLSNMNLSGRVSDHIQSLSSLSYFNISCNNFASSLPKSLSNLTSLENFDVSQNYFTGSFPIGLGRAAGLRLINASSNDFSGFLPEDIGNATLLESLDFRGSYFVSPIPRSFKNLQKLKFLGLSGNNFTGRIPGYLGDLTSLETLIIGYNLFEGEIPAEFGNLTSLQYLDLAVGSLSGEIPAELGKLTKLNTVYLYHNNFTGKIPPELGDVTSLAFLDLSDNQISGEIPEELAKLENLKLLNLMTNKLTGRVPEKLGELKNLQVLELWKNSLHGPLPPNLGQNSPLQWLDVSSNALSGDIPPGLCTTGNLTKLILFNNSFTGSIPSGLANCLSLVRVRIQNNLISGTIPVGFGNLLGLQRLEFAKNNLTGKIPSDITSSTSLSFLDVSWNNFESSLPSDILSIPTLQTFIASHNNFGGDIPDEFQDCPSLSVLDLSNTHISGTIPESIASCQKLVNLNLRNNHLTGEIPKSITSMPTLSVLDLSNNSLTGRIPDNIGNCPALELLNLSYNKLEGPVPSNGMLVTINPNDLIGNEGLCGGILPPCSPSMAVTSHRRSSHVRHIIIGFVTGISVILAFGAAYFGGRCLYNRWHLYNNFFYDWFKQNNEDWPWRLVAFQRISFTSSEILTCMKESNVIGMGSTGIVYKAEIHRPHVTVAVKKLWRSRTDIEDGNDVLREVELLGRLRHRNIVRLLGYVHNERNVMMVYEYMPNGNLGTALHGEESARLLVDWVSRYNIALGVAQGLNYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLARMMIQKNETVSMVAGSYGYIAPEYGYTLKVDEKIDIYSYGVVLLELLTGKMPLDPSFEESIDIVEWIRKKKSNKSLLEALDPAIASQCKHVQEEMLLVLRIALLCTAKLPKERPHMRDIITMLGEAKPRRKSVCHNGGQESSSMEKSSVLTTSPAISLL 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02214 1033 Pfam Leucine rich repeat N-terminal domain 42 87 IPR013210 -
Vimu3g02214 1033 SUPERFAMILY Protein kinase-like (PK-like) 719 997 IPR011009 -
Vimu3g02214 1033 PANTHER RECEPTOR-LIKE PROTEIN 55 423 998 - -
Vimu3g02214 1033 SUPERFAMILY L domain-like 67 366 - -
Vimu3g02214 1033 FunFam MDIS1-interacting receptor like kinase 1 806 1016 - -
Vimu3g02214 1033 Gene3D Phosphorylase Kinase; domain 1 723 805 - -
Vimu3g02214 1033 MobiDBLite consensus disorder prediction 1004 1033 - -
Vimu3g02214 1033 ProSiteProfiles Protein kinase domain profile. 723 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02214 1033 Gene3D Ribonuclease Inhibitor 268 329 IPR032675 -
Vimu3g02214 1033 Gene3D Ribonuclease Inhibitor 43 163 IPR032675 -
Vimu3g02214 1033 SMART serkin_6 723 997 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02214 1033 Pfam Leucine rich repeat 547 606 IPR001611 GO:0005515
Vimu3g02214 1033 PRINTS Leucine-rich repeat signature 308 321 - -
Vimu3g02214 1033 PRINTS Leucine-rich repeat signature 569 582 - -
Vimu3g02214 1033 Gene3D Ribonuclease Inhibitor 330 642 IPR032675 -
Vimu3g02214 1033 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 41 196 - -
Vimu3g02214 1033 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 380 642 - -
Vimu3g02214 1033 Pfam Protein kinase domain 725 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02214 1033 MobiDBLite consensus disorder prediction 1009 1033 - -
Vimu3g02214 1033 ProSitePatterns Serine/Threonine protein kinases active-site signature. 848 860 IPR008271 GO:0004672|GO:0006468
Vimu3g02214 1033 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 197 297 - -
Vimu3g02214 1033 FunFam MDIS1-interacting receptor like kinase 1 723 805 - -
Vimu3g02214 1033 Gene3D Ribonuclease Inhibitor 170 267 IPR032675 -
Vimu3g02214 1033 SUPERFAMILY RNI-like 270 613 - -
Vimu3g02214 1033 SMART LRR_typ_2 305 329 IPR003591 -
Vimu3g02214 1033 SMART LRR_typ_2 353 377 IPR003591 -
Vimu3g02214 1033 SMART LRR_typ_2 209 233 IPR003591 -
Vimu3g02214 1033 SMART LRR_typ_2 113 137 IPR003591 -
Vimu3g02214 1033 SMART LRR_typ_2 569 593 IPR003591 -
Vimu3g02214 1033 ProSitePatterns Protein kinases ATP-binding region signature. 729 753 IPR017441 GO:0005524
Vimu3g02214 1033 Gene3D Transferase(Phosphotransferase) domain 1 806 1022 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02214 Vimu-Chr3 36862737 36866050 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02214 22 1012 Receptor kinase-like Gene Family AT1G08590 65.316 0.0 1298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu3g02214 Pkinase 6.2e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02214 - - gmx:100817339 1862.04