Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02211 ATGTCTTCTCATGGATCCAGACCCACACCCTCACCCTCATCCTCACCTACATTCACTTCCACTTCTTTCTCCTTTCATTCTTCCTTCCCTCTCACTTTCATCTTCACCCTTTCTCACTTTCTTAACACATTTTATTCAAATTGCACCATCAGATCCTTAACTTTTATCCTTCTCTTTATGAACCGCGTCGATGTTAGTCGCATGCACAATCAACACAGGCTACTGTTTGTGAAAATTATGCTAAAACATTCTGATTTATTTTATTTGGCTGTTAGTATAACTGATCCTGGGACTCCCGTGAATATTATTGTGGGTTCTCATGTCTGGATTGAAGACCCAGAGGTATCTTGGATTGATGGACAGGTATTAAAAATCAATGGAAAGGATGCTGAAATTGAAACTACCAATGGAAAAAAGGTCAATGCAAATCTATCAAAAATATATCCTAAGGATATGGAAGCTCCTCCTGGTGGAGTGGACGATATGACTAAACTGTCCTATTTGCATGAGCCTGGAGTCCTGCAGAACTTGAAGGCTAGATATGAATTGAATGAAATATACACTTATACTGGAAATATTCTGATTGCTATAAATCCATTCCAAAGACTACCTCATATTTATGGTGCGCACATGATGCAACAATACAAGGGAGCACCATTTGGAGAATTAAGCCCTCATGTATTTGCAGTTGCTGATGTTGCATATAGGGCAATGATTAATGAAAAGAAAAGCAATTCAATTCTAGTCAGTGGGGAAAGTGGAGCTGGTAAAACTGAAACTACAAAAATGCTTATGCAGTACCTTGCTTTCTTAGGTGGTAGGGCTGGTACCGAAGGACGGACAGTTGAACAACAAGTTCTTGAATCAAATCCAGTTCTGGAAGCATTTGGGAATGCTAAAACTGTTAGGAATAACAATTCTAGTCGATTTGGTAAATTTGTTGAGATCCAATTTGATAAAAGTGGAAGAATATCAGGAGCTGCCATCCGAACATATCTTCTAGAGAGATCTCGGGTTTGCCAAATTAATGATCCTGAAAGGAATTACCATTGCTTTTATCTTCTTTGTGCTGCACCGCAGGAGGAAATTGAGAAATACAAATTAGGAAATCCTAAATCATTTCACTACCTTAACCAGTCAAAATGCTATGAACTGGCTGATGTAAGTGATGCTCGTGAATATCTTGCCACTCGAAGGGCTATGGATATTGTTGGAATAAGTCAAAAAGATCAGGAAGCCATTTTCAGAGTTGTTGCTGCAATTCTTCATATTGGTAATATTGAATTCACCAAAGGAAAAGAGGTTGACTCATCGGTTCCAAAAGATGACAATGCCAAATTCCACCTAAAAACAACTGCTGAGCTTCTCATGTGTGATGCTGATGCCTTGGAAGATGCATTATGTAAGCGTGTCATGATCACCCCTGAAGAAGTTATAAAAAGGAGCCTTGACCCCCAAAGTGCAGCAGTGAGTAGAGATGGGTTGGCAAAAACAATTTATTCTCGGCTATTTGACTGGCTGGTGGACAAGATAAATAATTCAATCGGACAAGACCCCAACTCTAAATCGTTGATTGGGGTCCTTGATATCTATGGTTTTGAAAGTTTTAAAGCTAACAGTTTCGAGCAATTTTGCATTAATTTCACAAATGAGAAGTTGCAGCAACATTTCAATCAGGCAAAGTCTAAGAACAAATTATGCACTTCAAGTTTCTTTGTTATTTCTGTATTTAATATGATTAAGATGATGACTTTCAGCACGTGTTTAAAATGGAACAAGAAGAATATACAAAGGAGGAGATCAATTGGAGCTACATTGAATTTGTTGACAATCAAGATGTTTTGGACCTTATTGAGAAGGCTTTTCCTTCCTTTTGTTCTTGTTATATTTTTTACATTGATTTTGCTTTTGCAGAAACCTGGAGGAATCATTGCTCTCCTCGATGAAGCTTGCATGTTCCCAAAATCAACTCATGAAACATTTGCAAACAAGCTTTATCAAACATTTAAGAATCACAAGCGCTTTATTAAGCCAAAATTGTCTCGAACGGATTTCACAATTGCTCATTATGCTGGGGAGGTACTATACCAGTCTGATCAATTCTTAGACAAAAACAAGGATTATGTGGTTCCAGAACATCAAGATTTATTGAGTGCTTCCAAATGTTCTTTTGTATCTGGCCTTTTTCCACCACTTCCAGAAGAGACGTCAAAATCTTCCAAATTTTCTTCAATTGGTTCTCGTTTTAAGCTACAACTACAAAGCCTAATGGACACATTAAATTCTACAGAACCCCATTACATTAGATGTGTGAAACCAAACAACCTCCTCAAGCCTGCAATTTTTGAGAATGTCAATATTATGCAACAACTTCGTTGTGGTGGTGTATTGGAGGCAATCAGAATCAGTTGTGCTGGCTACCCTACTCGTCGCGCTTTCTTTGAATTTATAAACAGATTTGGCATCCTTGCCCCAGAGACCATGGAAGCAAACTGTGATGAAAAAAATGCTTGCCAAAAGATTCTGGAAAAGATGGAGCTTAAAGGATATCAGATTGGAAAAACGAAGGTATTCTTGAGAGCAGGTCAGATGGCTGAATTAGATGCTCGGAGAGCTCAAGTACTTAGTAATGCAGCAAAAGTTATCCAACGTCGTGTACGAACCCATCAAGCACGCAGACACTATCTTGCATTGCGTAAGAAGACCATATACGTGCAGTCTCGGTGGAGAGGAAGACTTGCATGTAAACTCTATGAGCATTTGAGAAGGGAAGCTGCTGCTGTGAAAATTCAAAAGAACATACGTAGACATGAAGCTAGGAAAGCCTATAAAGAACTTCAGGTAGCAGTACTTACACTGCAAAGAGCTATAAGGGCCACTGCTGCTCGCAAGGAATTCAGATTTAGGAAGCAGACTAAAGCTTCCATCATCATTCAGGCTCGGTGGCGGTGTCACAAAGCTGCCATATATTATAAGAGGCTGAAGAAAGGTACAATAGTTACACAGTGCAGATGGAGGGGGCGTTTATCCAGGAGAGAACTTAGGAAACTGAAAATGGCTGCAAAAGAAACCGGTGCCTTACAAGAAGCAAAGGATAAACTTGAAAAACGAGTGGAGGAACTAACATGGCGTCTCCAACTAGAAAAAGGTTTAAAGACAAATTTAGAAGAATCCAAAGCTCAAGAGATAGCAAAACTGCAGAATTCATTGCAGGAGATGCAGATCAAATATGAAGAAACTAATGCTCTGCTCATTAAAGAGAGAGAGAATGTAAAGAAAGTTGTTGAAGAAGAACCTCCTGTCATTAAAGAAACACAGGTTATTGTTGAAGATACACAGAAGATTGAGACACTGACAGCAGAAATTGAGAGCCTAAAGACCTCGCTTGAGTCAGAGAGACAGAAAGCTGATGACTTCGAAAGAAAATACAATGAAGCCCAAGCTTGTAGTGAAGAGAGAGGTAAAAAAGTAGAAGACATGGAGAAGAAGGGTCGTCAGCTTCAAGAGCTAGAAGAGAAGATTACTAATTTAGAATCAGAGAATCAGGTACTACGTCAACAAGCTGTGTCCATGGCACCTAACAAGTTCCTTTCAGGACGTTCAAGATCAATCATCCAGAGAACTGAAAGTGGTCATATTATACCGGAAGCAAAGACACCTATGGAAATGCATAGTGCATCAATGCACCGGAGGGAACCCTCTGACGGTTTGGATGATAAACCACAAAAGTCACTAAATGAGAAACAACAGGAGAATCAAGAGTTACTCATCAGATGTATTGCACAACATCTTGGCTTTGCTGGGAACAGACCAATTGCTGCCTGTATCATATACAAATGCCTTTTGCACTGGCGATCTTTTGAAGTTGAGCGTACTAGTGTTTTTGATCGTATCATCCAAACTATTGGCCATGCAATTGAGACCCAGGATAATAATGATGTCTTGGCTTATTGGTTATCCAATGCCTCTACACTTCTCTTGTTACTCCAGCGCACACTCAAGGCTAGTGGTGCTGCTGGAATGGCTCCGCAACGCCGCCGTTCTTCATCTGCAACGTTGTTTGGAAGGATGACTCAAAGTTTCCGTGGAACTCCAGCTGGAGTAAACCTTTCCCTAGTCAATGGTAGCGCAAGCAGAGGAGTAGATACATTAAGACAAGTTGAAGCCAAGTACCCTGCCCTGCTTTTCAAACAGCAGCTTACAGCATATGTGGAAAAGATATATGGAATGATTCGTGATAATTTGAAGAAAGAAATTTCTCCCTTGCTTGGATTATGCATCCAGGCACCAAGAACATCAAGAGCAAGCCTTGTTAAGGGATCATCACGTTCTGTTGCAAACACTGAAGCCCAGCGTGCCTTAATTGCTCACTGGCAGGGGATAGTGAAGAGCCTAGGAAACTTTCTAAACACTTTGAAAGCTAACCATGTTCCTCCCTTTTTAGTTCGTAAGGTGTTCACGCAAATTTTTTCTTTCATCAATGTACAATTGTTTAATAGTCTTCTTTTACGACGGGAGTGCTGCTCATTTAGTAATGGAGAATATGTCAAAGCTGGTCTGGCTGAATTGGAGCATTGGTGTTATAAGGCAACAGATGAGTATGCAGGTTCTGCCTGGGATGAGCTCAAACATATTAGACAAGCTATTGGATTTCTGGTCATTCATCAGAAACCAAAGAAAACATTGGATGAAATAAGCCATGACCTGTGCCCAGTCCTTAGTATACAGCAACTATATCGGATAAGCACCATGTACTGGGATGACAAATATGGAACGCATAGTGTGTCCTCTGATGTCATATCCAACATGAGAGTATTGATGACTGAAGATTCAAATAATGCAGTTAGTAACTCGTTCCTGTTGGATGATGATTCAAGCATTCCGTTTTCTGTTGATGACATATCGAAATCAATGGAACAGATAGATATTGCAGATATAGAGCCACCGCCACTAATTCGTGAAAACTCTGGCTTTAGCTTTTTGTTGCCGCGCCCAGATTGA 5001 0.3999 MSSHGSRPTPSPSSSPTFTSTSFSFHSSFPLTFIFTLSHFLNTFYSNCTIRSLTFILLFMNRVDVSRMHNQHRLLFVKIMLKHSDLFYLAVSITDPGTPVNIIVGSHVWIEDPEVSWIDGQVLKINGKDAEIETTNGKKVNANLSKIYPKDMEAPPGGVDDMTKLSYLHEPGVLQNLKARYELNEIYTYTGNILIAINPFQRLPHIYGAHMMQQYKGAPFGELSPHVFAVADVAYRAMINEKKSNSILVSGESGAGKTETTKMLMQYLAFLGGRAGTEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKSGRISGAAIRTYLLERSRVCQINDPERNYHCFYLLCAAPQEEIEKYKLGNPKSFHYLNQSKCYELADVSDAREYLATRRAMDIVGISQKDQEAIFRVVAAILHIGNIEFTKGKEVDSSVPKDDNAKFHLKTTAELLMCDADALEDALCKRVMITPEEVIKRSLDPQSAAVSRDGLAKTIYSRLFDWLVDKINNSIGQDPNSKSLIGVLDIYGFESFKANSFEQFCINFTNEKLQQHFNQAKSKNKLCTSSFFVISVFNMIKMMTFSTCLKWNKKNIQRRRSIGATLNLLTIKMFWTLLRRLFLPFVLVIFFTLILLLQKPGGIIALLDEACMFPKSTHETFANKLYQTFKNHKRFIKPKLSRTDFTIAHYAGEVLYQSDQFLDKNKDYVVPEHQDLLSASKCSFVSGLFPPLPEETSKSSKFSSIGSRFKLQLQSLMDTLNSTEPHYIRCVKPNNLLKPAIFENVNIMQQLRCGGVLEAIRISCAGYPTRRAFFEFINRFGILAPETMEANCDEKNACQKILEKMELKGYQIGKTKVFLRAGQMAELDARRAQVLSNAAKVIQRRVRTHQARRHYLALRKKTIYVQSRWRGRLACKLYEHLRREAAAVKIQKNIRRHEARKAYKELQVAVLTLQRAIRATAARKEFRFRKQTKASIIIQARWRCHKAAIYYKRLKKGTIVTQCRWRGRLSRRELRKLKMAAKETGALQEAKDKLEKRVEELTWRLQLEKGLKTNLEESKAQEIAKLQNSLQEMQIKYEETNALLIKERENVKKVVEEEPPVIKETQVIVEDTQKIETLTAEIESLKTSLESERQKADDFERKYNEAQACSEERGKKVEDMEKKGRQLQELEEKITNLESENQVLRQQAVSMAPNKFLSGRSRSIIQRTESGHIIPEAKTPMEMHSASMHRREPSDGLDDKPQKSLNEKQQENQELLIRCIAQHLGFAGNRPIAACIIYKCLLHWRSFEVERTSVFDRIIQTIGHAIETQDNNDVLAYWLSNASTLLLLLQRTLKASGAAGMAPQRRRSSSATLFGRMTQSFRGTPAGVNLSLVNGSASRGVDTLRQVEAKYPALLFKQQLTAYVEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLVKGSSRSVANTEAQRALIAHWQGIVKSLGNFLNTLKANHVPPFLVRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEYVKAGLAELEHWCYKATDEYAGSAWDELKHIRQAIGFLVIHQKPKKTLDEISHDLCPVLSIQQLYRISTMYWDDKYGTHSVSSDVISNMRVLMTEDSNNAVSNSFLLDDDSSIPFSVDDISKSMEQIDIADIEPPPLIRENSGFSFLLPRPD 1666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02211 1666 Gene3D - 925 972 - -
Vimu3g02211 1666 Gene3D - 973 1022 - -
Vimu3g02211 1666 Gene3D - 874 924 - -
Vimu3g02211 1666 CDD MYSc_Myo11 171 860 IPR036018 -
Vimu3g02211 1666 Gene3D Kinesin motor domain 764 802 IPR036961 -
Vimu3g02211 1666 ProSiteProfiles IQ motif profile. 994 1023 IPR000048 GO:0005515
Vimu3g02211 1666 ProSiteProfiles IQ motif profile. 898 927 IPR000048 GO:0005515
Vimu3g02211 1666 Gene3D Kinesin motor domain 160 533 IPR036961 -
Vimu3g02211 1666 Gene3D - 636 763 - -
Vimu3g02211 1666 Coils Coil 1052 1090 - -
Vimu3g02211 1666 Coils Coil 1153 1187 - -
Vimu3g02211 1666 FunFam Myosin heavy chain 347 402 - -
Vimu3g02211 1666 PANTHER MYOSIN 149 1597 - -
Vimu3g02211 1666 ProSiteProfiles IQ motif profile. 946 975 IPR000048 GO:0005515
Vimu3g02211 1666 SMART MYSc_2a 152 873 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu3g02211 1666 Pfam IQ calmodulin-binding motif 925 944 IPR000048 GO:0005515
Vimu3g02211 1666 Pfam IQ calmodulin-binding motif 972 991 IPR000048 GO:0005515
Vimu3g02211 1666 Pfam IQ calmodulin-binding motif 996 1015 IPR000048 GO:0005515
Vimu3g02211 1666 Pfam IQ calmodulin-binding motif 877 895 IPR000048 GO:0005515
Vimu3g02211 1666 MobiDBLite consensus disorder prediction 1222 1248 - -
Vimu3g02211 1666 MobiDBLite consensus disorder prediction 1223 1247 - -
Vimu3g02211 1666 FunFam unconventional myosin-Va 926 973 - -
Vimu3g02211 1666 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 103 152 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vimu3g02211 1666 Gene3D - 807 873 - -
Vimu3g02211 1666 Gene3D - 347 405 - -
Vimu3g02211 1666 ProSiteProfiles Myosin motor domain profile. 157 872 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu3g02211 1666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 925 1023 IPR027417 -
Vimu3g02211 1666 Gene3D Myosin VI head, motor domain, U50 subdomain 407 517 - -
Vimu3g02211 1666 Gene3D Myosin VI head, motor domain, U50 subdomain 708 741 - -
Vimu3g02211 1666 PRINTS Myosin heavy chain signature 524 552 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu3g02211 1666 PRINTS Myosin heavy chain signature 244 269 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu3g02211 1666 PRINTS Myosin heavy chain signature 187 206 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu3g02211 1666 PRINTS Myosin heavy chain signature 291 318 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu3g02211 1666 ProSiteProfiles IQ motif profile. 875 902 IPR000048 GO:0005515
Vimu3g02211 1666 Coils Coil 1017 1044 - -
Vimu3g02211 1666 ProSiteProfiles Dilute domain profile. 1296 1609 IPR002710 -
Vimu3g02211 1666 SMART iq_5 993 1015 IPR000048 GO:0005515
Vimu3g02211 1666 SMART iq_5 970 992 IPR000048 GO:0005515
Vimu3g02211 1666 SMART iq_5 874 896 IPR000048 GO:0005515
Vimu3g02211 1666 SMART iq_5 897 919 IPR000048 GO:0005515
Vimu3g02211 1666 SMART iq_5 945 967 IPR000048 GO:0005515
Vimu3g02211 1666 SMART iq_5 922 944 IPR000048 GO:0005515
Vimu3g02211 1666 Coils Coil 1108 1149 - -
Vimu3g02211 1666 Pfam Myosin head (motor domain) 636 860 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu3g02211 1666 Pfam Myosin head (motor domain) 159 560 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vimu3g02211 1666 Pfam DIL domain 1485 1588 IPR002710 -
Vimu3g02211 1666 ProSiteProfiles IQ motif profile. 971 998 IPR000048 GO:0005515
Vimu3g02211 1666 CDD MyosinXI_CBD 1247 1632 IPR037975 GO:0007015
Vimu3g02211 1666 FunFam unconventional myosin-Va 974 1021 - -
Vimu3g02211 1666 Gene3D - 534 561 - -
Vimu3g02211 1666 FunFam Myosin 2 407 522 - -
Vimu3g02211 1666 SMART DIL_2 1484 1591 IPR002710 -
Vimu3g02211 1666 Pfam Myosin N-terminal SH3-like domain 104 145 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vimu3g02211 1666 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 925 IPR027417 -
Vimu3g02211 1666 ProSiteProfiles IQ motif profile. 923 952 IPR000048 GO:0005515
Vimu3g02211 1666 FunFam unconventional myosin-Va 877 925 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02211 Vimu-Chr3 36813772 36829474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02211 97 1666 Myosins gene family AT1G54560 79.111 0.0 2586
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02211 K10357 - gmx:100816792 2771.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02211 3 36813772 36829474 Vimu3g02211 3 36813772 36829474 ECH
Vimu6g02639 6 23064289 23081928 Vimu3g02211 3 36813772 36829474 PCT
Vimu2g01656 2 11781889 11800450 Vimu3g02211 3 36813772 36829474 PCT