Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02201 ATGTCAAGCGCAGCGCAACCCAAAATTAAGAAAACAGCGGCTACCACCAAGAAGCCGCTCTCTCATCCTACTTTTGCCGTGATGATAGTGGAGGCTATTACAAGTCTGAAGGAGAGAACTGGTTCAAGCCAATATGCGATAACGAAGTTCATTGAAGGGAAGCACAAGGAGTTGCCACCAACCTACAAGAAACTTGTACTCATTCAGCTCAAGAAGTCTGTTGCTGCTGGCATACTTGTCAAGGTTAAAAATTCCTTTAAACTTGCACCCACTAAACCTGTCTCTGCTCCTGCCAAGGCTGTTGTTGCTGCTCCTAAAAAGCCCAAGTCTGTTACCAAAACCACCACCAAGGCTGCTTCTAAGCCCAAGCCCAAGCCCGCTCCTAAGAAGAAACCTGTGTCTAAGCCCAAGGCTAAGACTGCTGCTGCAGCTGCCAAGCCCAAGGCCAAGCCTGCCAAGAAGGTTGTTGCCAAGTCTGTCAAGAAGACTCCGGTAAAGGCGGTGAAGAAGCCCAAGAGTGTAGTGAAGAAACCCAAGAGTGTGAAGTCTCCAGCCAAGAAAACCAAGAAGTGA 573 0.4852 MSSAAQPKIKKTAATTKKPLSHPTFAVMIVEAITSLKERTGSSQYAITKFIEGKHKELPPTYKKLVLIQLKKSVAAGILVKVKNSFKLAPTKPVSAPAKAVVAAPKKPKSVTKTTTKAASKPKPKPAPKKKPVSKPKAKTAAAAAKPKAKPAKKVVAKSVKKTPVKAVKKPKSVVKKPKSVKSPAKKTKK 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02201 190 PANTHER HISTONE H1 5 177 - -
Vimu3g02201 190 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 21 90 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu3g02201 190 SMART h15plus2 19 85 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu3g02201 190 MobiDBLite consensus disorder prediction 151 190 - -
Vimu3g02201 190 Gene3D - 16 103 IPR036388 -
Vimu3g02201 190 CDD H15 21 93 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu3g02201 190 MobiDBLite consensus disorder prediction 94 190 - -
Vimu3g02201 190 Pfam linker histone H1 and H5 family 22 89 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vimu3g02201 190 PRINTS Histone H5 signature 111 125 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vimu3g02201 190 PRINTS Histone H5 signature 35 52 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vimu3g02201 190 PRINTS Histone H5 signature 8 29 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vimu3g02201 190 PRINTS Histone H5 signature 146 163 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vimu3g02201 190 PRINTS Histone H5 signature 168 187 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Vimu3g02201 190 SUPERFAMILY "Winged helix" DNA-binding domain 18 99 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02201 Vimu-Chr3 36725878 36726532 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02201 23 88 Single Myb Histone (SMH) Gene Family AT1G72740 31.818 2.85e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02201 K11275 - gmx:100810590 141.739