Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02199 TACAACACCTTCGACCCCGTTGACTCTTATTTCTCCGTCACCGCAAACGACCTCAAGCTTCTTTCCAACTTCAGCGCCTCCGTCACCTGCCAAGCCCTCTCACAAGCCTACCTCGACCGAGAGTATTCCCTTGCGCCTTTGGATTCCGACACTCTCACCGTCACCTTCACCCCCTCTGACAAACACGATAAAGCTTTTGCATTTGTTAATGGGATTGAGCTCATCGAAATGCCGGAGTTGTTTGACGAGGCTCCCTTGTTGGGTTTCGATGACCAAACCATGGATACCAAGACTATGCATTTTCAGACCATGTTCAGGTTAAACGTTGGAGGACAATACATCGCTCCAAGTAATGATTCTGGTCTATCCAGAATGTGGTACGATGATACGCCTTATATTTATGGTTCTGCCACTGGTGTCACCAACCAAGCTACCAAGGAAGAAAAAATCGACTACAAAACCCAGCCAGAGTCCATTGCTCCTGTCGATATCTACTCCACTTCCCGATCCATGGGAGCCAATAAGGATGTCAACATGGGCTACAATCTCACATGGATATTCCAAGTTGACCCGGCTTCTATGTATCTTACCCGGTTGCATTTCTGCGAATATCACTATTCCAAAGCAAATCAGATTGTTTTCAAAATCTACATCAACAACCGCACAGCGGAGACTGCTGCTGATGTGATTGGGTGGTCAGGAGGTCAAGGAGTGCCAACGTACAAGGATTATGTATTATATGTGAAAGATCAACCAGGTGATGATGAACTCTGGCTTGCTTTGCACCCTGCAAATGAATCAAAGCCAGAATTTTATGACGCGTTACTCAATGGGGTGGAGGTGTTCAAGCTCAATGACACAGACCTGTCTGGTCCCAATCCCCAGCCTTCTGACATGCTGGTTCAAAATGAGCACAAGTCAAATACTTTCCATAGAAAACATGAGACTAGTAGAACTTTTGTAATAAGCACTGCTGGGGGTGCTGCAGGTTTTGCTTTGGTGGCTGCAATAATTGTTGTTGCTCGTCGGCAAAAGAAAAAGAGAGCTCCGGGGACGTACACCGGCACGTCCAGCTGGCTGCCTCTTTATGGCCATTCGCACACAGCAGGCACCAAATCCTCAGGATCAGGGAAGAGTACGGGCCATTCCAACCTAACAGCCATGACTCAAGGATTATGCCGCTATTTCTCCTTACATGATATGAAGCAAGCTACCAAGAATTTCGATGAATCTAACGTGATAGGGGTGGGAGGGTTTGGAAAGGTTTATAAGGGTGTTATTGATAATGGATTCAAAGTGGCAATCAAGAGATCGAACCCGCAATCAGAACAAGGAGTGAACGAGTTTCAGACAGAGATTGAGATGCTGTCCAAGTTGAGACACAAACATTTGGTGTCCTTGATTGGTTTTTGCGAGGAGGGTGATGAGATGTGTCTGGTTTATGACTACATGGCTCTTGGCACCATGAGGGAACACCTTTACAAGGGAAACAAGCCATTGGACCTGCTAACATGGAAGCAGAGGTTGGAGATCTGCATAGGAGCCGCAAGAGGCCTTCACTACCTTCACACTGGAGCAAAATACACCATCATTCACAGAGATGTCAAAACAACCAACATTCTCCTTGATGAAAACTGGGTTGCCAAGGTTTCAGATTTTGGACTGTCCAAAACAGGTCCAAACATGAATCAAGGTCATATTAGTACAGTGGTGAAGGGTAGCTTTGGATACTTGGATCCCGAATATTTCAGGAGGCAACAGTTGACTGAGAAGTCTGATGTGTACTCGTTTGGGGTGGTGCTGTTTGAGGCCCTTTGTGCAAGGCCTGCTCTC 1833 0.4648 YNTFDPVDSYFSVTANDLKLLSNFSASVTCQALSQAYLDREYSLAPLDSDTLTVTFTPSDKHDKAFAFVNGIELIEMPELFDEAPLLGFDDQTMDTKTMHFQTMFRLNVGGQYIAPSNDSGLSRMWYDDTPYIYGSATGVTNQATKEEKIDYKTQPESIAPVDIYSTSRSMGANKDVNMGYNLTWIFQVDPASMYLTRLHFCEYHYSKANQIVFKIYINNRTAETAADVIGWSGGQGVPTYKDYVLYVKDQPGDDELWLALHPANESKPEFYDALLNGVEVFKLNDTDLSGPNPQPSDMLVQNEHKSNTFHRKHETSRTFVISTAGGAAGFALVAAIIVVARRQKKKRAPGTYTGTSSWLPLYGHSHTAGTKSSGSGKSTGHSNLTAMTQGLCRYFSLHDMKQATKNFDESNVIGVGGFGKVYKGVIDNGFKVAIKRSNPQSEQGVNEFQTEIEMLSKLRHKHLVSLIGFCEEGDEMCLVYDYMALGTMREHLYKGNKPLDLLTWKQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDENWVAKVSDFGLSKTGPNMNQGHISTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEALCARPAL 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02199 611 FunFam Os07g0541700 protein 488 573 - -
Vimu3g02199 611 ProSitePatterns Protein kinases ATP-binding region signature. 414 436 IPR017441 GO:0005524
Vimu3g02199 611 Gene3D Phosphorylase Kinase; domain 1 369 483 - -
Vimu3g02199 611 FunFam receptor-like protein kinase FERONIA 371 483 - -
Vimu3g02199 611 SMART serkin_6 408 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02199 611 ProSiteProfiles Protein kinase domain profile. 408 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02199 611 Pfam Protein tyrosine and serine/threonine kinase 412 606 IPR001245 GO:0004672|GO:0006468
Vimu3g02199 611 FunFam FERONIA receptor-like kinase 99 285 - -
Vimu3g02199 611 Gene3D Transferase(Phosphotransferase) domain 1 484 611 - -
Vimu3g02199 611 Gene3D - 100 285 - -
Vimu3g02199 611 SUPERFAMILY Protein kinase-like (PK-like) 384 609 IPR011009 -
Vimu3g02199 611 PANTHER OS07G0166700 PROTEIN 392 610 IPR045272 GO:0004714|GO:0006468
Vimu3g02199 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672|GO:0006468
Vimu3g02199 611 Pfam Malectin-like domain 7 283 IPR024788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02199 Vimu-Chr3 36719654 36721489 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02199 1 611 Receptor kinase-like Gene Family AT3G51550 56.051 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vimu3g02199 Malectin_like 1.9e-26 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02199 - - gmx:100815737 1031.94