Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02191 ATGGACGCACAAGAGGACAACAACTACAACAACTACTGCAACATGATTAACTTCGAAGAAACCGAGTTGCGACTCGGCCTCCCTGGTGCCTCTGCAACTGATCATGGCGAGTTAACTCTGAAGGGCAGTGGTGGCAAGAGAGGCTTCTCTGAAACTGCTTCTGTTGATTTAAAGCTCAATCTTTCTTCCAATAACGACTCTGCCTCGGTTTCACCGGCTACTGAGAACCCCAAAGAGAAAACTACAACAGTCGAAACTCCTCCTCGGGCTAACGACCCAGCAAAGCCACCTGCAAAGTATGCAATATGGATCTTGACTGAGACATGGAAGGGGGCACAGGTTGTGGGTTGGCCACCAGTGAGATCTTTTAGGAAGAACATAGTGAATGTTCATCAAAGGAGCAATAGCAATGAAGAAGGTGAGAAGAGTGGTGGAGGAGGAGGAGGAGCGTTTGTGAAAGTGAGCATGGATGGTGCACCGTATCTACGGAAGGTGGACATAAGGTTGTACAAGAGCTACCAAGAGCTGTCAGAAGCGCTGGCTAAGATGTTCAGTTCCTTTACAATTCAGAAGTGTGGGTCCCAAGGGACCAAATTGATTGACCTTTTGAATGGCTCTGATTATGTACCCACATATGAAGACAAGGACGGAGACTGGATGCTCGTCGGTGATGTTCCCTGGGAAATGTTCGTTCAATCATGCAAGCGCCTCCGCATAATGAAAGGTTCTGAAGCTATTGGCCTTGTTTATGTTAACTGGGTTTGGTTTTGTCCCCTCCTTCCTTCCTATTATCAGTTATGCGTTTACCTTCACGTTATGCACAGCATTCAAGACTCTGTTCTTAGTCAAATTATTAGGATCTGGTTGGCTGAGAGGATGTTCGACAGCCTACGATCTATGAACAAAAAGATAAGATGGACCCCTGCCACGTGA 933 0.4673 MDAQEDNNYNNYCNMINFEETELRLGLPGASATDHGELTLKGSGGKRGFSETASVDLKLNLSSNNDSASVSPATENPKEKTTTVETPPRANDPAKPPAKYAIWILTETWKGAQVVGWPPVRSFRKNIVNVHQRSNSNEEGEKSGGGGGGAFVKVSMDGAPYLRKVDIRLYKSYQELSEALAKMFSSFTIQKCGSQGTKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVQSCKRLRIMKGSEAIGLVYVNWVWFCPLLPSYYQLCVYLHVMHSIQDSVLSQIIRIWLAERMFDSLRSMNKKIRWTPAT 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02191 310 SUPERFAMILY CAD & PB1 domains 145 241 - -
Vimu3g02191 310 Gene3D - 146 253 - -
Vimu3g02191 310 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 17 247 IPR003311 GO:0005634|GO:0006355
Vimu3g02191 310 MobiDBLite consensus disorder prediction 60 88 - -
Vimu3g02191 310 Pfam AUX/IAA family 20 248 IPR033389 -
Vimu3g02191 310 ProSiteProfiles PB1 domain profile. 149 242 IPR000270 GO:0005515
Vimu3g02191 310 FunFam Auxin-responsive protein 145 252 - -
Vimu3g02191 310 MobiDBLite consensus disorder prediction 60 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02191 Vimu-Chr3 36680225 36683457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02191 135 245 B3 DNA Binding Superfamily AT2G46530 32.432 1.70e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vimu3g02191 AUX_IAA 2.4e-76 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02191 K14484 - gmx:100781847 324.709