Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02190 ATGGCAGGTAACGGTAGCTCGGAGGGGTTGGGAGATGATTTCTTCGAGCAGATCTTAGCAGTGCCCGAAGCTCCAGTGGGATATGGTAGAACCGTAGCCACTGATGTTGGAATGCTGCAATTGGGGTCCACAACTCCAACTGCCGCTGCTCTCAGAGGTGGTGGAATGATGCCTCTGGGCCTGAATTTGGAGCAATCTGCCTTTCTAAGCCACCATGATTCCAGAAACCTAGTTGACGATGTTGTTAATGTCGATCCCACCGTTCACAATAATCACCACCACCATCATCATCAACACCTCACGCTCCATAATAACAACTCATCACCCTCTTCTACCCCACCAATCACCGATCGCGATTCGATGCACGTGAGAGGTTTGTTTTCAGCGTTTGGACAGTTGCATAGTCCTACTCTTGTTCCCTCTGTCCGCCCCACGCTGTCATCGCCTCCACCGCCTCCTCAGCCACAGCTCCACCTCCACCACCATAACCAACAGGCGTTTCAAGGCCAGGGAGGTGGAGGTCCAGCGTCTATGAGTGGTACCCAACAAGCACCTGGCATTCGCCCTCGTGTGAGAGCAAGAAGAGGGCAAGCCACAGATCCACATAGTATCGCTGAACGGTTGCGTCGCGAAAGAATTGCCGAAAGAATGAAGGCATTGCAGGAGTTAGTTCCCAGCATCAATAAGACGGACCGAGCGGCGATGCTTGATGAAATTGTGGATTATGTCAAGTTCCTAAGGCTCCAGGTTAAGGTCCTGAGCATGAGTAGACTGGGGGGAGCTGGTGCAGTTGCTCAACTTGTGGCTGATGTTCCCCTTTCTGCAGTGGAGCAAGGAGAGGACATAGAAGGTGGAGCCAATGAGCAAGCCTGGGACAAGTGGTCCAATGACGGTACAGAACAACAAGTTGCTAAACTTATGGAAGAAGATGTGGGTGCAGCTATGCAATTTCTTCAGTCCAAGGCACTTTGCATCATGCCCATATCTCTAGCCTCAGCCATTTTTCGTATGCCTCAATCAGAATCATCAACAGGGATCAAGCCTGAATCAAACAAAGGATATGTGGTCGATGCAGCTGTTCGCTCTTCTCAAGTTCTGTCAAAGAAGGAGTAA 1113 0.5067 MAGNGSSEGLGDDFFEQILAVPEAPVGYGRTVATDVGMLQLGSTTPTAAALRGGGMMPLGLNLEQSAFLSHHDSRNLVDDVVNVDPTVHNNHHHHHHQHLTLHNNNSSPSSTPPITDRDSMHVRGLFSAFGQLHSPTLVPSVRPTLSSPPPPPQPQLHLHHHNQQAFQGQGGGGPASMSGTQQAPGIRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSINKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSAVEQGEDIEGGANEQAWDKWSNDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRMPQSESSTGIKPESNKGYVVDAAVRSSQVLSKKE 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02190 370 MobiDBLite consensus disorder prediction 87 119 - -
Vimu3g02190 370 Gene3D - 192 254 IPR036638 GO:0046983
Vimu3g02190 370 Pfam Helix-loop-helix DNA-binding domain 202 246 IPR011598 GO:0046983
Vimu3g02190 370 MobiDBLite consensus disorder prediction 158 184 - -
Vimu3g02190 370 MobiDBLite consensus disorder prediction 138 201 - -
Vimu3g02190 370 MobiDBLite consensus disorder prediction 143 157 - -
Vimu3g02190 370 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 71 332 - -
Vimu3g02190 370 SMART finulus 203 252 IPR011598 GO:0046983
Vimu3g02190 370 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 197 246 IPR011598 GO:0046983
Vimu3g02190 370 MobiDBLite consensus disorder prediction 102 117 - -
Vimu3g02190 370 FunFam Basic helix-loop-helix transcription factor 192 254 - -
Vimu3g02190 370 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 195 256 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02190 Vimu-Chr3 36672738 36677079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02190 167 351 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 72.581 1.35e-77 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu3g02190 HLH 3.8e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02190 - - gmx:100807570 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02190 3 36672738 36677079 Vimu3g02190 3 36672738 36677079 ECH