Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02189 ATGCCCTGGTGCTCTCGATTTGTACAGCGCGGCCTCCTCCCATCGCATCACATCACACACAATCAAACCAAAGGAGACGTAACATACGATATGGATAGGGTGTTCTCCTCAGTCGACGAAATCTCCGATCACTTCTGGCCATCGCCGCCGATCCCCGTCTCCGCCGCCGATGAGGCCTCCAAGATGAGCCGTAGCGCCTCCGAGTGGGCCTTCCAACGCTTCATCCAGGAAGCTTCCACCCCCTCTCCTTCCTCCGCCACCACGGCTGCTTCTGTCGCCGCTACTGACGTCGTCTTTGTCGAGATCGACGATCATCCCAAACCTGCCCCTCCTCCTCCCCAGAACGCCACCGTTTTGCCCAATGCCCCTGTTCCCGTACCCCTTGACTCCGATGAGTACCAGGCCTTCCTCAAGAGCAAGCTCAACCTTGCATGCGCAGCTGTTGCCATGACTAGGGCATCTTTGGCTAAATCTCAAGAGCCAGCCCCTTTTTCTGATGGTGGATCACAGCCTATCGATCCTTCTCAAGTTGGATCTCAGACTACATCTAAAGGATCTATTCCTTCTGGAAATGATCCATCTAAGTTACAAGATAAAGATACGAAAGTACCAGTTGGGATGCCTTCCATACCTTCCACGCAAAAGAAACCTGTTGTTGCAGTTAGACCATCAACAAGTGGATCATCAAGAGAACTGTCAGATGATGATGATGCTGAGGGAGAGACATCTATGAATGACATGGACCCAGCTGATGCAAAAAGAGTAAGGAGGATGCTATCCAATAGGGAGTCTGCCCGGCGCTCTAGAAGAAGAAAGCAAGCTCATTTAACTGACCTAGAAACACAGGTTTCTCAATTAAGAGGTGAAAATTCTACCTTGTTGAAGCGCCTTACTGATGTAAGTCAGAAATACAGTGAATCTGCTGTTGACAACAGAGTTTTAAAAGCTGATGTGGAAACATTAAGAGCAAAGGTGAAGATGGCTGAAGAGACCGTCAAAAGAATTACCGGGTTGAACCCAATGGTTCATGCCATGTCTGACATGTCGTCATTGGGCATGACGTTATTTGATGGAAGAAGCCCTTCAGACACTTCAGCCGATGCAGCTGTTCCTGTGCAAGATGATCATCATCACTTCTATCAACCCACATCTAATAATCCTATTCCCAGTCATGATCCGATAGTCAACGATGGGTTGGCGGGCATGTCTTCAATTGAAAATGTGCAGCAGAACCCTGCAGCAGTGGCAGGTGGGAACAAGATGGGTCAAACTGCTTCCCTGCAGCGGGTAGCTAGCTTGGAACATCTTCAGAAGCGGATTCGTGGTGGTGTGGATTCCTGTGGACCTCCTTCTAATGGGGAGCAGTAA 1368 0.4956 MPWCSRFVQRGLLPSHHITHNQTKGDVTYDMDRVFSSVDEISDHFWPSPPIPVSAADEASKMSRSASEWAFQRFIQEASTPSPSSATTAASVAATDVVFVEIDDHPKPAPPPPQNATVLPNAPVPVPLDSDEYQAFLKSKLNLACAAVAMTRASLAKSQEPAPFSDGGSQPIDPSQVGSQTTSKGSIPSGNDPSKLQDKDTKVPVGMPSIPSTQKKPVVAVRPSTSGSSRELSDDDDAEGETSMNDMDPADAKRVRRMLSNRESARRSRRRKQAHLTDLETQVSQLRGENSTLLKRLTDVSQKYSESAVDNRVLKADVETLRAKVKMAEETVKRITGLNPMVHAMSDMSSLGMTLFDGRSPSDTSADAAVPVQDDHHHFYQPTSNNPIPSHDPIVNDGLAGMSSIENVQQNPAAVAGGNKMGQTASLQRVASLEHLQKRIRGGVDSCGPPSNGEQ 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02189 455 PANTHER BASIC LEUCINE ZIPPER 63 31 445 - -
Vimu3g02189 455 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 256 271 IPR004827 GO:0003700|GO:0006355
Vimu3g02189 455 Pfam Basic leucine-zipper C terminal 320 444 IPR020983 -
Vimu3g02189 455 Coils Coil 269 296 - -
Vimu3g02189 455 SUPERFAMILY Leucine zipper domain 253 303 IPR046347 GO:0003700|GO:0006355
Vimu3g02189 455 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 251 306 IPR004827 GO:0003700|GO:0006355
Vimu3g02189 455 CDD bZIP_plant_GBF1 254 305 IPR045314 GO:0003700|GO:0006355
Vimu3g02189 455 Coils Coil 311 331 - -
Vimu3g02189 455 MobiDBLite consensus disorder prediction 159 253 - -
Vimu3g02189 455 Pfam bZIP transcription factor 252 305 IPR004827 GO:0003700|GO:0006355
Vimu3g02189 455 SMART brlzneu 249 313 IPR004827 GO:0003700|GO:0006355
Vimu3g02189 455 Gene3D - 252 308 - -
Vimu3g02189 455 MobiDBLite consensus disorder prediction 260 279 - -
Vimu3g02189 455 FunFam BZIP transcription factor 251 302 - -
Vimu3g02189 455 MobiDBLite consensus disorder prediction 163 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02189 Vimu-Chr3 36661290 36667468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02189 31 342 bZIP Transcription Factor Family AT4G02640 39.941 3.35e-48 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu3g02189 bZIP_C 9.8e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02189 K25784 - gmx:100170702 635.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02189 3 36661290 36667468 Vimu3g02189 3 36661290 36667468 ECH
Vimu2g01683 2 12032896 12034673 Vimu3g02189 3 36661290 36667468 PCT