Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02185 ATGAAAGGGTGGGAGGAGTTGTTAATGGCTAGCTCACCGTCTTCACCAAAGATTCAGGAGCAGATTTTGGGAAGGAAGTACAAGCCTCAAGCCTATTCACTTGTGGCAGATTTCAGGAACTTGGGAAGAAGATCAGACTCTAATTACATGCGTTTGAGGTGCTTTGATCTGTATAAACTGCACTCTTGGGCAGGATGGTTAACTGAATTTGCAGATGGAAGAAATCAGGAGAGTACTAGTGAAGCTGTGAATGCATATTTTTCTGCAGCATTGATGGGTCTAGCATATGGTGACACTCAACTTATTGCCACTGGATCAACACTTGCAGCATTGGAAATTCATTCAGCTCAAATGTGGAGGATTTGGGAGAGGGACATAAACTGCACGAGGAAGATTATACAAAAGAGAACAAGGTGCATTTGTATTGTCTTCACTCTTCTACAACCAAGAGAAAGTAGTCCAGAACAAGATGCTAACAAGACTTTGAACAGCCACAGTGCATCCCTGATTACCTATTCTGATTGTGAGGAAGAGGATCTCATTCCAATGACTCAAGAGATGAGACAGCGAACCCCATCAGCTTATAACTGCTTCATCAAAGAAGAGATTAACAGGCTAAAGGCTGAGAGCCCTGACATGGCTCACAAAGAAGCTTTTAGTACAGCTGCAAAAATAACGGCGCTTTTCTTAAGCATTATCTTGAAAATATTTCATTTTCACTGGGCCAATTTTCCCCCAACTCAGTGCAAAGGAGATGATCAAGAGAGCTGTAGCCAGACAGATCAACTTGTGGATCTTGACTCCCAAGTGGACCCTCCTAATGTTGAGGTAAAAGCATAA 840 0.425 MKGWEELLMASSPSSPKIQEQILGRKYKPQAYSLVADFRNLGRRSDSNYMRLRCFDLYKLHSWAGWLTEFADGRNQESTSEAVNAYFSAALMGLAYGDTQLIATGSTLAALEIHSAQMWRIWERDINCTRKIIQKRTRCICIVFTLLQPRESSPEQDANKTLNSHSASLITYSDCEEEDLIPMTQEMRQRTPSAYNCFIKEEINRLKAESPDMAHKEAFSTAAKITALFLSIILKIFHFHWANFPPTQCKGDDQESCSQTDQLVDLDSQVDPPNVEVKA 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02185 279 PANTHER ENDO-1,3(4)-BETA-GLUCANASE 1 24 124 IPR005200 GO:0052861
Vimu3g02185 279 Pfam YABBY protein 157 232 IPR006780 GO:0007275
Vimu3g02185 279 MobiDBLite consensus disorder prediction 250 279 - -
Vimu3g02185 279 Pfam Glycosyl hydrolase family 81 C-terminal domain 23 143 IPR040720 -
Vimu3g02185 279 CDD HMG-box_SF 190 224 - -
Vimu3g02185 279 MobiDBLite consensus disorder prediction 250 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02185 Vimu-Chr3 36625997 36627399 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02185 20 119 Glycoside Hydrolase AT5G15870 67.961 5.50e-43 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Vimu3g02185 YABBY 6.3e-22 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02185 K01180 - gmx:100816319 186.422