Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02181 GTGGGAATTCTCTTAATTGATGACATGGAGCAGTATGAAATACTTGAGCAAATTGGAAAAGGTGCTTTTGGTTCTGCTCTTCTTGTGAGACATAAGCATGAAAAGAAAAAATATGTGTTGAAGAAGATTCGCCTTGCACGTCAAACCGAGCGCTCTCGCAGATCTGCACATCTAGAGATGGAGCTAATCTCTAAATTAAGAAACCAATTCATTGTGGAGTACAAAGATTCGTGGGTAGAAAAGGGTTGCTATGTCTGCATCATTATAGGTTATTGTGAGGGAGGAGATATGGCGGAAGCTATAAAGAAAGCTAATGGTGTCCTGTTTCCCGAGGAGAAACTTTGTAAGTGGCTCGTTCAACTTCTTATGGCTCTTGAGTACTTGCACATGAACCACATTCTTCACCGTGATGTCAAGTGTTCAAATATCTTCTTGACAAAAGATCATGACATACGGCTCGGTGATTTTGGACTTGCCAAAATGTTGACGTCTGATGATCTCGCTTCCTCTGTTGTGGGAACTCCTAGCTACATGTGCCCTGAGCTCCTTGCTGATATACCTTATGGTTCTAAATCAGATATTTGGTCCTTGGGATGCTGTATATATGAAATGACATCGCATAAGCCTGCATTCAAAGCATTTGATATACAGGCATTGATTAACAAGATTAATAAATCAATAGTGGCTCCACTGCCTACAAAATATTCCAGTTCGTTTCGAGGTCTAGTTAAAAGTATGCTGCGCAAGAATCCAGAGCTTAGGCCAAGTGCTACAGAGCTGCTTGGACATCCACATCTTCAGTCTTACGTTCTTAAGGTCCATCTCAAAATCAATAGCCCCAGGCGAAACACATTGCCAGTTCATTGGCCAGAATCCAATTACTTGAAGAAAACTAGATTTTTGGTGCCAGAAGATGACCCTGTTTCTCTGTTTAGGGATAAGAGACATTCTTTCAGTAATGATCGGACTCTGAACCCTAGTGTATCTGGAGCTGATCAAGATTCTTTGTGCTCTACTCTTGAAATAGATTGTACTCCTGACCATTTGAATCAAAGATTAGCAGAACTACGTGTTGGAGATAGCCACGAATTGAAATCAATCCGGAAGCCTGCTGTTTCCAGAACTTCTAGCATTGCTAAGACTCCAAGATTCACTTCCTCAAAAGTCTCTGGCACCAACAAGAAAACAATGAAATTCTCAAAGAATCATAAAGAGATGCCTCGTTCACACAGTACTACAAAATCTGCTAATACTAACCGTAGAGCATCATTTCCATTGCCAACAAGAGGTGGTATTCGACAGCCTCCTTCCAGGCCGAATGCCACTATGATTAGTCACGTGTCTTCACCTGATATCTCAGTCAATTCTCCACGAATTGATAAGATGGCTGAATTCCCATTAACTTCATATGTGGATTCTTTGTTCCCCATCAATAAAACATCATCCTTTGTTCAATGTTCCTCTGGCCTCCCATCCAGCGGTAACCATTCCACTGTGATAGACAAATGCACGGTAGAGGTTCATGATATAGCCTCAAACAGACCCGACTGTACTGAGTCTTGGCAGGGAATCAAGCAGAGCGTGTTAAAGGAAATTGATGAGGATAAAAGTGGTTCCTCTGATCAAAATGCAACGGCAGGTGCTTCAAGCCACACATCTTCTGACCTGCGCCGTAGACAATTTGACCCGTCATCATTCCAACAAAGGGCTGAAGCTTTAGAAGGGTTGCTTGAATTTAGTGCAAGATTGCTACAGCAGGCAAGGTATGATGAACTTGGGGTTCTATTAAAACCATTTGGGCCTGGGAAGGTTTCCCCAAGGGAAACAGCTATCTGGTTGAGTAAGAGCTTCAAAGAGAATACTTTCAACCCAGAAGAATCCATGTAA 1887 0.4208 VGILLIDDMEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQTERSRRSAHLEMELISKLRNQFIVEYKDSWVEKGCYVCIIIGYCEGGDMAEAIKKANGVLFPEEKLCKWLVQLLMALEYLHMNHILHRDVKCSNIFLTKDHDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMTSHKPAFKAFDIQALINKINKSIVAPLPTKYSSSFRGLVKSMLRKNPELRPSATELLGHPHLQSYVLKVHLKINSPRRNTLPVHWPESNYLKKTRFLVPEDDPVSLFRDKRHSFSNDRTLNPSVSGADQDSLCSTLEIDCTPDHLNQRLAELRVGDSHELKSIRKPAVSRTSSIAKTPRFTSSKVSGTNKKTMKFSKNHKEMPRSHSTTKSANTNRRASFPLPTRGGIRQPPSRPNATMISHVSSPDISVNSPRIDKMAEFPLTSYVDSLFPINKTSSFVQCSSGLPSSGNHSTVIDKCTVEVHDIASNRPDCTESWQGIKQSVLKEIDEDKSGSSDQNATAGASSHTSSDLRRRQFDPSSFQQRAEALEGLLEFSARLLQQARYDELGVLLKPFGPGKVSPRETAIWLSKSFKENTFNPEESM 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02181 628 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 9 578 - -
Vimu3g02181 628 FunFam Serine/threonine-protein kinase Nek3 94 340 - -
Vimu3g02181 628 CDD STKc_Nek 11 266 - -
Vimu3g02181 628 Gene3D Phosphorylase Kinase; domain 1 3 91 - -
Vimu3g02181 628 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Vimu3g02181 628 Pfam Protein kinase domain 12 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02181 628 Gene3D Transferase(Phosphotransferase) domain 1 92 282 - -
Vimu3g02181 628 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02181 628 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02181 628 MobiDBLite consensus disorder prediction 398 441 - -
Vimu3g02181 628 MobiDBLite consensus disorder prediction 532 563 - -
Vimu3g02181 628 MobiDBLite consensus disorder prediction 539 554 - -
Vimu3g02181 628 FunFam Serine/threonine-protein kinase Nek2 9 91 - -
Vimu3g02181 628 SUPERFAMILY Protein kinase-like (PK-like) 9 308 IPR011009 -
Vimu3g02181 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02181 Vimu-Chr3 36601363 36607270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02181 18 268 MAP Kinase Kinase Kinase AT1G53570 31.250 2.15e-35 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Vimu3g02181 Pkinase 1.1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02181 K08857 - gmx:100804898 1133.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02181 3 36601363 36607270 Vimu3g02181 3 36601363 36607270 ECH
Vimu2g01698 2 12105900 12111080 Vimu3g02181 3 36601363 36607270 PCT