Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02180 ATGTTCGATGGAGTACCTGAGCAGTTCCACGAATTCATAACTCCAAGGACCTCAGTGCCTCTTCACTTACCTTTCCCTCTACATGCTTCTGCCACTCCTAATACCACCTTCCCTTCCAATTTTGATCCTTATAACCCTCATCAGCTCCCACTTCAACCCAACACTCTCTTGCACCCATTACACCACCCACCTCCTCCTACCCACAAAGATGAACAACACAAGGAACAACAAAACACCGCCCTCCCAATGAACTTCCAAATCCAAAGAGATCAAAGACACCAACTTCCCCAGCTCATTCATCCATGGACTAACGACGAAGTCCTTTCTCTCTTGAGGATCAGATCTAGCATGGAGAGTTGGTTCCCAGAACTCACTTGGGAACACGTCTCCAGGAAGCTGGCAGAGCTTGGATATAAAAGGAGTGCAGAGAAGTGCAAGGAGAAATTTGAAGAAGAAAGTAGATACTTCAACAACAACATTAATTACGGCAAGAATAACAACAATTATCGGTTTCTCAGTGAGCTCGAACAGCTTTACCATCAAGGGGGTGCCGATCATCTCGGGACCCAAGAAAAGACTCACCAACTATACAAACAAGACAAGATGGACCACCATCCATTGGAAGAAGGGGATTCTGGAAAACTTGAGCCACCAATCACGAAACAAAACCACTATGCACCAGCTGTGGAGAAGAATCAGGGACGCAAGAGAAAGAGGCTCGGTAGGTTTGAAATGTTCAAGGGTTTTTGTGAGAGCATTGTGCACAAGATGATGGCGCAGCAAGAAGAGATGCACAACAAGCTCCTCGAGGATATGATGAAGAGAGACGAAGAGAAGTTCACTCGAGAGGAAGCTTGGAAGAAGCAAGAGATGGAGAAGATGAACAAGGAGCTCGAGATGATGGCTCGTGAGCAGGCCATTGCAGGTGATAGACAGACCAACATTATTCAAATACTGAACAAATTCTCGGTCACTCCTGCATCGAACAAGAGCCTCAAGGTAGTAACTAATGGTTCAAACCTAAAATCTCACATTACCCAAAACCCTAATCCTTCACAAAACATCCCAGCTACACCCGCAACAGAAAACCCTACCTCGAGTGTTGCACAAGACACATTACAACTGATTACCAATCCTTCTACTTCTTCCTCTTCGGCTCAAGTTCCTCAACCCAACCCTAGTTCTTCCTCTCTAAATAGCCAGAATAATATAAACCCAATAGAGAAAAATCCGGTTTTGAATAAAAGTTTGTCATCAAACGTTGGTGAGAAAGACGATGTTGGGAGAAGGTGGCCAAAGGACGAAGTGTTAGCACTGATAAACCTGAGGTGCAGCAGTGTGAGCAACAACAGCATCAATGAGGAGAAGGAAGGGAACAAGGTGCCTCTGTGGGAGAGAATCTCACAAGGGATGTCGGAGTTAGGATACAGGAGGAGTGCAAAGAGGTGCAAAGAGAAGTGGGAGAACATAAACAAGTACTTCAGAAAAACCAAGGATGTTAATAAGAAGAGGTCCCTGGACTCAAGGACTTGTCCCTACTTTCATCAATTGAGCAGTCTCTATAATGAAGGAAAACTGGTTCTACAATCGGAAAGGCCAGAAAGCCACACGGATAATCCAGCTGAGAATCTGGAGCAAGTGCAAGCGGATCAAACACGACCCGAGCCTTCTTCTCAAGTGGGGTCTGGTGGTTTCAGTGTGCAGCAGCAGGTTGATCATGGAGGTGAGAAAACCTTGATGCAAGTACCTTCTTTGGATTTTGATCAGTTTTAA 1773 0.4529 MFDGVPEQFHEFITPRTSVPLHLPFPLHASATPNTTFPSNFDPYNPHQLPLQPNTLLHPLHHPPPPTHKDEQHKEQQNTALPMNFQIQRDQRHQLPQLIHPWTNDEVLSLLRIRSSMESWFPELTWEHVSRKLAELGYKRSAEKCKEKFEEESRYFNNNINYGKNNNNYRFLSELEQLYHQGGADHLGTQEKTHQLYKQDKMDHHPLEEGDSGKLEPPITKQNHYAPAVEKNQGRKRKRLGRFEMFKGFCESIVHKMMAQQEEMHNKLLEDMMKRDEEKFTREEAWKKQEMEKMNKELEMMAREQAIAGDRQTNIIQILNKFSVTPASNKSLKVVTNGSNLKSHITQNPNPSQNIPATPATENPTSSVAQDTLQLITNPSTSSSSAQVPQPNPSSSSLNSQNNINPIEKNPVLNKSLSSNVGEKDDVGRRWPKDEVLALINLRCSSVSNNSINEEKEGNKVPLWERISQGMSELGYRRSAKRCKEKWENINKYFRKTKDVNKKRSLDSRTCPYFHQLSSLYNEGKLVLQSERPESHTDNPAENLEQVQADQTRPEPSSQVGSGGFSVQQQVDHGGEKTLMQVPSLDFDQF 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02180 590 CDD GT1 429 498 - -
Vimu3g02180 590 FunFam Trihelix transcription factor GTL2 431 496 - -
Vimu3g02180 590 FunFam Trihelix transcription factor GT-2 102 158 - -
Vimu3g02180 590 ProSiteProfiles Myb-like domain profile. 430 491 IPR001005 -
Vimu3g02180 590 PANTHER FI21293P1 65 576 - -
Vimu3g02180 590 Coils Coil 259 279 - -
Vimu3g02180 590 MobiDBLite consensus disorder prediction 545 575 - -
Vimu3g02180 590 MobiDBLite consensus disorder prediction 341 427 - -
Vimu3g02180 590 Gene3D - 431 496 - -
Vimu3g02180 590 Gene3D - 102 158 - -
Vimu3g02180 590 ProSiteProfiles Myb-like domain profile. 101 153 IPR001005 -
Vimu3g02180 590 Pfam Myb/SANT-like DNA-binding domain 429 519 IPR044822 -
Vimu3g02180 590 Pfam Myb/SANT-like DNA-binding domain 100 178 IPR044822 -
Vimu3g02180 590 MobiDBLite consensus disorder prediction 52 76 - -
Vimu3g02180 590 MobiDBLite consensus disorder prediction 545 590 - -
Vimu3g02180 590 MobiDBLite consensus disorder prediction 341 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02180 Vimu-Chr3 36583741 36585879 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02180 1 588 Trihelix Transcription Factor Family AT5G28300 39.642 3.07e-101 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vimu3g02180 Myb_DNA-bind_4 2.3e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02180 - - gmx:100804367 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02180 3 36583741 36585879 Vimu3g02180 3 36583741 36585879 ECH
Vimu2g01699 2 12120641 12123350 Vimu3g02180 3 36583741 36585879 PCT