Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02178 ATGGCGGATTCTTCAAGCAACTCCAAGGATAAGAACAACACGCGCCTCTACCATCCCTACCAGGACCTCAACGTACCAATCCAAAAACTCTATAACCTCCCCACCGCGCCGGAGCACCTCTTCTCGGAAGAAGCCGCCAGGACCCACCGCTCCTGGGGCGACAACCTCCAGTACTACACCGGCACCGCCTACCTCTCCGGTGCAATCATCGGCGCCACCAGAGGCACCGTCCAGGGCCTCCGCGAGGCCGAGTCCGGGGACTCCCTCAAAATCCGTCTCAACCGAGTGCTCAACTCGGGCGGCCACGCGGGTCGCAAACTCGGTAACTCGCTTGGCGTCCTGGGTCTCATCTTCGCCGGCCTCGAGAGTGGAATGATCCACGCCAGGGGCACCGATGACTTAGTCAACAGCGCCATCGCGGGACTCGGCACCGGAGCGCTCTACAGGGCCGCCGCGGGACCTCGATCGGCTGCCATTGCAGGTGCGATCGGAGGGATCGCCGCGGCGGCGGCGGTTGGAGGAAAGCAGGCTTTGAAGAGATACATACCGATCTAG 555 0.627 MADSSSNSKDKNNTRLYHPYQDLNVPIQKLYNLPTAPEHLFSEEAARTHRSWGDNLQYYTGTAYLSGAIIGATRGTVQGLREAESGDSLKIRLNRVLNSGGHAGRKLGNSLGVLGLIFAGLESGMIHARGTDDLVNSAIAGLGTGALYRAAAGPRSAAIAGAIGGIAAAAAVGGKQALKRYIPI 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02178 184 PANTHER TIM23 26 171 IPR045238 GO:0022857
Vimu3g02178 184 Pfam Tim17/Tim22/Tim23/Pmp24 family 58 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02178 Vimu-Chr3 36573019 36573573 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02178 2 184 Chloroplast and Mitochondria Gene Families AT1G72750 55.914 7.21e-64 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02178 K17794 - gmx:100779163 290.426