Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02169 ATGAATGGGGTCACACACCTTGAACCAGATGACTCTGAGTTTGTTGAAGTTGATCCAACTGGCAGATATGGCAGATACAATGAAATCCTCGGAAAAGGAGCTTCAAAGACAGTATATAGGGCATTTGATGAGTATCAAGGGATTGAAGTTGCTTGGAACCAGGTCAAGCTGTATGATTTTCTGCAAAGTCCTGAAGATCTTGAGAGGCTTTATTGTGAAATTCATCTCCTGAAAACATTGAAGCACAGGAACATTATGAAATTCTACACTTCTTGGGTTGATACTGCGAATAGGAATATCAACTTCGTGACTGAAATGTTCACCTCCGGTACACTTAGACAACAGATCTTGAGTGGACTTCTCTATCTTCATAGTCACGATCCGCCTGTGATCCATAGAGATCTAAAATGTGATAACATATTTGTCAATGGAAACCAAGGGGAAGTGAAGATTGGGGATCTTGGTTTGGCAGCAATTCTCCGGAAATCTCATGCAGCTCATTGTGTAGGGACGCCAGAGTTCATGGCCCCTGAAGTATATGAAGAGGCATATAATGAGCTAGTTGACATCTATTCCTTTGGGATGTGCATACTAGAGATGGTCACATTTGAATATCCTTATAGTGAATGTACTCATCCGGCTCAAATCTATAAGAAAGTTGTTTCTGGGAAAAAGCCAGATGCTTTATATAGAGTGAAGGATCCGGAGGTGCGACAATTTGTTGAAAAATGCTTGGCCACGGTGTCTCTTAGGCTTTCTGCAAGGGAGCTTCTAGATGATCCATTTCTTCGAATTGACGATTATGAATATGATACGAGAACTGTAGAAAATGGAGAAATGGATGAATTTGGTCCTCTCATCAGACAGCCATTCTTTGATCTTCATCGAAGCTACAGTAACTTCAGTAATGAATACTCAAATGGCTTTGGGTACGAAGGAGACTGGTGTCCTCATCCGGCTGAGATTGAACCGAGTGGAATTGAACTTTTTGAATACCATGATGATGAACCCTCTGAAGATGTTGACATAAGCATCAAGGGCAAGAGGAAAGATGATGGTGGCATCTTTTTGAGACTAAGAATTGCTGATAAAGAAGGTCGCATCCGAAATATTTATTTCCCATTTGACATAGAGACGGACACAGCAATAAGTGTGGCAACTGAAATGGTTGCAGAGCTGGACATTACTGATCAGGATGTTACCAGAATAGCTGATATGATTGATGGGGAAATTGCTTCCTTGGTACCTGAATGGAGACCGGGACCAGGAATTGACGAAACTCCCCGTTTTGCAAATCAAGGTTTCTGTCACAATTGTGTATCTAATCATACTTCTAGCGGCTCTTTTTTGGATTTTCTCTCACACAATCCAGGTGACAAGAACCTGCAACTAGGGTGTTGTAGGCATGGATGTGCTTCAATGCATGGGCGGTTTGAGGAGATTACCTTCCAATCTGAAGAGTATGACAACCATGCTAGAGGGGATCTGAACATATCAAGCCAGTTAGACAGCTTGCAGTATCAGGAGTTATGGAATCAGCACGAAAGTCGTGAACTGAGTCCAGTAGAGTCTGATCAAAGCCATTCTGATGAACAATGCGAACAATTAGATAAACTACTTCCAGCTAAGGATAAAGAACACGATGTTTGGGAAAACAAGGTTTCATTCAGTGCTGCAAATTCTCGAAGAAATTTATCTGGAAGTCATGACTTCTCTACTGTCCAATCTGCCTACTGTGACCTAGGAGATGACTATGAGAAAGAGATCCAAAAGGAACTCAGATGGCTAAGAGCCAAGTACCAAATGGAATTAAGGGATCATAAGGACCGACAGTTTGAGCAATCTTCACACAGTACTGACAAAGAGCACAAAACAGAAAATGGCTTATTGTCACCTTCACTGACAGAAACATCATTAAAAGAAGGTAACAATGGGACTCAGATGAAACCTCCTACTAATAAGTGGCATTATGATTCTAGTAACCACCCTCATGTCCATGAAAGCAGCCCCAATTCGGACACCCAAAGGGCCCAAAATTGTGAGGCGACAGAATCCCCTGGCAAAGGTATGGTTACTGCAAAGAGTTTTTATACTGGCTCATTGCTTCCACACTCTCTGCACAGGACAGTTTCCCTACCAGTTGATGCTGTTGATATATAA 2160 0.4185 MNGVTHLEPDDSEFVEVDPTGRYGRYNEILGKGASKTVYRAFDEYQGIEVAWNQVKLYDFLQSPEDLERLYCEIHLLKTLKHRNIMKFYTSWVDTANRNINFVTEMFTSGTLRQQILSGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSHAAHCVGTPEFMAPEVYEEAYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVVSGKKPDALYRVKDPEVRQFVEKCLATVSLRLSARELLDDPFLRIDDYEYDTRTVENGEMDEFGPLIRQPFFDLHRSYSNFSNEYSNGFGYEGDWCPHPAEIEPSGIELFEYHDDEPSEDVDISIKGKRKDDGGIFLRLRIADKEGRIRNIYFPFDIETDTAISVATEMVAELDITDQDVTRIADMIDGEIASLVPEWRPGPGIDETPRFANQGFCHNCVSNHTSSGSFLDFLSHNPGDKNLQLGCCRHGCASMHGRFEEITFQSEEYDNHARGDLNISSQLDSLQYQELWNQHESRELSPVESDQSHSDEQCEQLDKLLPAKDKEHDVWENKVSFSAANSRRNLSGSHDFSTVQSAYCDLGDDYEKEIQKELRWLRAKYQMELRDHKDRQFEQSSHSTDKEHKTENGLLSPSLTETSLKEGNNGTQMKPPTNKWHYDSSNHPHVHESSPNSDTQRAQNCEATESPGKGMVTAKSFYTGSLLPHSLHRTVSLPVDAVDI 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02169 719 Gene3D Phosphorylase Kinase; domain 1 8 105 - -
Vimu3g02169 719 MobiDBLite consensus disorder prediction 608 691 - -
Vimu3g02169 719 SMART serkin_6 24 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02169 719 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Vimu3g02169 719 Pfam Protein kinase domain 27 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02169 719 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 627 - -
Vimu3g02169 719 Gene3D Transferase(Phosphotransferase) domain 1 106 268 - -
Vimu3g02169 719 FunFam Probable serine/threonine-protein kinase WNK1 9 105 - -
Vimu3g02169 719 ProSiteProfiles Protein kinase domain profile. 24 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02169 719 Gene3D - 353 418 - -
Vimu3g02169 719 MobiDBLite consensus disorder prediction 608 627 - -
Vimu3g02169 719 FunFam probable serine/threonine-protein kinase WNK9 353 437 - -
Vimu3g02169 719 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 356 410 IPR024678 GO:0004674|GO:0005524
Vimu3g02169 719 MobiDBLite consensus disorder prediction 628 682 - -
Vimu3g02169 719 CDD STKc_WNK 22 263 - -
Vimu3g02169 719 SUPERFAMILY Protein kinase-like (PK-like) 27 264 IPR011009 -
Vimu3g02169 719 FunFam probable serine/threonine-protein kinase WNK9 102 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02169 Vimu-Chr3 36503114 36506126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02169 114 718 MAP Kinase Kinase Kinase AT3G04910 53.333 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vimu3g02169 Pkinase 8.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02169 K08867 - gmx:100272198 1363.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02169 3 36503114 36506126 Vimu3g02169 3 36503114 36506126 ECH
Vimu2g01707 2 12192976 12195994 Vimu3g02169 3 36503114 36506126 PCT