Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02168 ATGGCGGACAAGGCAGTGACCATCCGAACCAGAAAATTCATGACAAACAGGCTTCTCTCCAGAAAACAATTCGTTGTTGATGTCCTTCACCCAGGGAGGGCCAATGTTTCCAAGGCTGAGTTGAAGGAGAAATTGGCAAGAATGTATGAGGTGAAGGACCCCAACACTGTATTTGTCTTCAAGTTCCGAACTCACTTTGGTGGTGGCAAGTCCACTGGATTTGGTTTGATCTATGATTCAGTTGACAATGCGAAGAAGTATGAGCCTAAGTACAGGCTTATCAGGAATGGACTTGATACCAAGGTAGAGAAATCAAGGAAGCAGATGAAGGAGAGAAAGAATAGAGCGAAGAAGATTCGTGGTGTAAAGAAGACGAAGGCTTCCGATGCTGCCAAGGCTGGAAAAAAGAAATGA 414 0.4469 MADKAVTIRTRKFMTNRLLSRKQFVVDVLHPGRANVSKAELKEKLARMYEVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVDNAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02168 137 Hamap 30S ribosomal protein S24e [rps24e]. 4 106 IPR001976 GO:0003735|GO:0005840|GO:0006412
Vimu3g02168 137 Pfam Ribosomal protein S24e 25 103 IPR001976 GO:0003735|GO:0005840|GO:0006412
Vimu3g02168 137 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 6 108 IPR012678 GO:0003735|GO:0005840|GO:0006412
Vimu3g02168 137 PANTHER 40S RIBOSOMAL PROTEIN S24 1 131 IPR001976 GO:0003735|GO:0005840|GO:0006412
Vimu3g02168 137 Gene3D - 1 132 - -
Vimu3g02168 137 FunFam 40S ribosomal protein S24 1 137 - -
Vimu3g02168 137 ProSitePatterns Ribosomal protein S24e signature. 66 88 IPR018098 -
Vimu3g02168 137 MobiDBLite consensus disorder prediction 102 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02168 Vimu-Chr3 36488883 36491858 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02168 1 132 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 87.121 7.88e-85 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02168 K02974 - gmx:100802918 241.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02168 3 36488883 36491858 Vimu3g02168 3 36488883 36491858 ECH
Vimu2g01709 2 12210721 12212329 Vimu3g02168 3 36488883 36491858 PCT