Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02165 ATGCTTTCCCCGTTGGTTTCTTGGTTCTTGTCTCCTTCCTCCTCCTCTTCCTCTTCCGAAGAAGAAGAAAACCTTGACATTAACACTCATGATCACACTAAGCATCAATACTTGAATACACAAGATGATGATAATGACCAATATCTTAGCTCATGCGATGTGGATGAAACCATTCCCGTTGCTCTTGCCGTTCCCAGTGCCACCCCTGCCGTGACGGTGGCCTTTCCGGCCGACGATGAAAGAAGCACGGTTCCCGGCACCACCGCCACTGCCACCACATTTGTAACGCGCTCAAAAGGGCAGTGCTCCAACAAGTATTCGGGCATTGTGAGACAATATCAGAGACTGTGGACGAAGCAGGACGAGAAGGAACTGCTAAAGGGATACCTTGATTACATTAAGCAGCATGGGAGGACAGCCACCACCCTCCAAAACGACGTAGCCTCGTTGTATGATCACGTGAGACCCAAACTGAACGTCGATTTCAACAAGAATCAGCTTGTTGAGAAGCTGCGTAGACTAAAGAGGAAGCACAAATTGGCTTTGAACAAAGGCACGGACAAGGAAGTTCCCTTTAGGAACCCCCAGGAACAGGCCATTTTCGAAATTTCAAACAAGATTTGGGGCAATGACACTGATAACCTATTAGACCAAGAGTCTTTGGATGGTGATGCGTCGGGACGCACTCCTGAAAGTCGTTACCTTGGGGGCAACGTTAAGGTGAAGGTTGATCAACTTGACAACAGTGATGAAATAGACGAGAGATTGCCAAAGCGGTTGCGGTTAGATGATGCAGAAGATGTGAACAGAACAAATGAACATAACAATAGTGGCAGCCTGCAGGTCTTCATTGAGGAGACCATGAGGTCCTGTTTCTCCCCATTGCTGAAAGAAATGTTTGATGAAGTCAACCAAGAGCCACCTCCTGGGTTGGTGCCAATCCCATTGCCGCTATATCCTGAGGAAGTAGACCATGAGCAATGGAGAAAACGAGGGATTTTAGAGCTGGAGGTGTATTTGAAGAGGTTGGAGTTGTTGCAGGATCAGATCAAGGCTAGATTGGAGGAATTGCGATCTAGACGGGAGGTGTATGATAAAACTTCTCCAACAGCTTGTGCTTTATCCAACACCAACAACTTCAACGAATAG 1149 0.4717 MLSPLVSWFLSPSSSSSSSEEEENLDINTHDHTKHQYLNTQDDDNDQYLSSCDVDETIPVALAVPSATPAVTVAFPADDERSTVPGTTATATTFVTRSKGQCSNKYSGIVRQYQRLWTKQDEKELLKGYLDYIKQHGRTATTLQNDVASLYDHVRPKLNVDFNKNQLVEKLRRLKRKHKLALNKGTDKEVPFRNPQEQAIFEISNKIWGNDTDNLLDQESLDGDASGRTPESRYLGGNVKVKVDQLDNSDEIDERLPKRLRLDDAEDVNRTNEHNNSGSLQVFIEETMRSCFSPLLKEMFDEVNQEPPPGLVPIPLPLYPEEVDHEQWRKRGILELEVYLKRLELLQDQIKARLEELRSRREVYDKTSPTACALSNTNNFNE 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02165 382 MobiDBLite consensus disorder prediction 1 26 - -
Vimu3g02165 382 Coils Coil 336 367 - -
Vimu3g02165 382 PANTHER BNAANNG10740D PROTEIN-RELATED 13 356 IPR007592 GO:0006355
Vimu3g02165 382 Pfam Protein of unknown function, DUF573 114 209 IPR007592 GO:0006355
Vimu3g02165 382 Coils Coil 164 184 - -
Vimu3g02165 382 MobiDBLite consensus disorder prediction 1 22 - -
Vimu3g02165 382 MobiDBLite consensus disorder prediction 214 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02165 Vimu-Chr3 36462160 36463308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02165 58 359 GeBP Transcription Factor Family AT5G28040 33.516 4.21e-47 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GeBP Vimu3g02165 DUF573 1.7e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02165 - - var:108344158 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01710 2 12214001 12219911 Vimu3g02165 3 36462160 36463308 PCT