Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02159 ATGGCTTTTTCTCACGACTTGGAGGTTGAATCCTCTTCTCCCCCTCTCGTGTTTGACGTGCGGAGGAGCGAACCAGAGCTGGTGGCTCCGGCCAAGCCCACTCCCCGCGAGACCAAGCTGCTATCAGACATAGACACCCAACCGGGCCTCCGAGTCCAAATTCCAATCATACAGTTCTACAGAAACAACCCATCAGTGGCAGGGAAGGACCCAGTTAAAGCCATTAGACACGCTCTCGCTGAAACCCTAGTTTTCTACTACCCGTTGGCTGGAAGGATTAAGGACGGTCCTGACGGAAGCCAGGTGGTGGATTGCAACGAGGAGGGTGTGATGTTCATCGAGGCCGATGCTGATATCACACTCCAACAATTCGGTCACACTCTTAAACCCCCTTTCCCGAACTTCCAAGAACTCCTTTACCAACCTCCCGGTTCGGAAGCGGTCACTGATACACCCATTTTTATTATACAGGTGACGCGTTTGAAATGCGGTGGTTTCATCTTTACGCTCCGTTTCAACCACACCATAGTCGACGGAGTTGGCGCCTTTCAGTTCGCAACTACCATGGCAGGGATAGCTCGGGGAGTCTTCCAAGAACCTCCATTCGAACCTTTGTGGCATAGGGACCTTCTCTTAGCCAGGGACCCGCCACGTGTCACATTCAACCATCGGGAGTACGAGCAACTCACAGACTCCGGCGACGCCGTTCCACAGAACTACGAGCAACGGTCATTCTTCTTCGGCCCTGCCGAAACTGCCGCCATCCGCGCCCTCCTCCCCCGTGACCTCGACCAGCACGCCACCACCTTCGAGGTGTTGACGTCTTACGTCTGGCGCTGCCGCACAAGAGCGCTTCGGTTCAATCCGAAGGAGGACGTCCGAATGATGTGCATCGTCGATGCACGTGGCAAGTTCACGTCGGCCTCACTGACTAATTATTATGGTAGCTGCTTCGGGTTTCCGGCAGCTGTTACCGCCGCCGGAGAGCTTTCCTCGGAGCCGTTGGAGTATGCGGTGAGGCTGATACAGAAGGCAAGGAGCGAGGTGAGCGAGGAGTATATTCACTCGGTGGCGGATCTGATGGCGACTTCGGGAAGGCCTTTGTTTACTGTGGTGAGGTCGTGTCTGGTTTTGGATACGACGGATATTGGATTTAGAGATTTGGATTTCGGGTGGGGGAAGGCGGTGTATGGAGGAATGGCCGTTGCTGGTGCTGGGACGTTTCCTGCAGTGAACTTTCATGTCCCTACTGATCTATGCCCCTCTCCCGGGCACAAGATCTATGACCACACTGCACTTCCTTTCCCGTATGGTGAAACTTCATAA 1326 0.5445 MAFSHDLEVESSSPPLVFDVRRSEPELVAPAKPTPRETKLLSDIDTQPGLRVQIPIIQFYRNNPSVAGKDPVKAIRHALAETLVFYYPLAGRIKDGPDGSQVVDCNEEGVMFIEADADITLQQFGHTLKPPFPNFQELLYQPPGSEAVTDTPIFIIQVTRLKCGGFIFTLRFNHTIVDGVGAFQFATTMAGIARGVFQEPPFEPLWHRDLLLARDPPRVTFNHREYEQLTDSGDAVPQNYEQRSFFFGPAETAAIRALLPRDLDQHATTFEVLTSYVWRCRTRALRFNPKEDVRMMCIVDARGKFTSASLTNYYGSCFGFPAAVTAAGELSSEPLEYAVRLIQKARSEVSEEYIHSVADLMATSGRPLFTVVRSCLVLDTTDIGFRDLDFGWGKAVYGGMAVAGAGTFPAVNFHVPTDLCPSPGHKIYDHTALPFPYGETS 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02159 441 Gene3D - 224 418 IPR023213 -
Vimu3g02159 441 Pfam Transferase family 22 402 - -
Vimu3g02159 441 PANTHER ACYL TRANSFERASE 4 18 399 - -
Vimu3g02159 441 Gene3D - 17 223 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02159 Vimu-Chr3 36401541 36408504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02159 27 417 Monolignol Biosynthesis Gene Families AT5G48930 27.764 2.23e-42 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02159 K19861 - gmx:100820325 673.315