Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02153 ATGAGTGAGAGAGTGAAGAAGGAAAAGCCGACGGAGAAAAGAGAGAGGATGAAGAACATCTTCAAGAAGCTTCACATAGGTGGCAACCACGATCCTCAGCGATCCAATGACAATTCCCCACCTGTGCCGTCGCCCTCATGCGCCGCCGATCACTCTCAAAGCTCCGGCGCCACTCCTGCGAGTCCCTCGTCGGCCTCGGCCACAGCGTCTGCCTCCACCGCAGTGTCTACTCCCGGCGGCGGCTTGAGTCCGGTGGTGAATCGGCAGGACTTTTTCTCGTCGGAGGAGGAGTTTCAGGTGCAGCTAGCCCTAGCTATCAGCGCTTCCAATTCGGAGTTCCGCGACGATCCTGAGAAGGATCAGATCCACGCGGCGACGCTGTTGAGTCTAGGAGGTCTTCGAATCGATTCGGCGAGGAGCAAGAACGACGCGTCGGAGGCGCTGTCGAGGCAGTACTGGGTAAGTTGTGTATTGGAACTTAGATTCGGGGCTCTATATGTGTCTAGGACTAGCTACTCCAGTGAGGAATATAATGTGCTTGACTATGAGGAGAAAGTAGTAGATGGTTTTTATGATGTATATGGGCCCTCTAATGATTCAGTGATGCAAGGAAAGATGCCATCTCGAACGGATCTTGAAGCAAATCCGGGAGGTTCTGAGGTGGTCATTGTGAATAGAACAATTGATCCTGCACTGGAAGAACTGATACAAATTGCACAATGTATTGCATTAGACTGCCCGGTCACTAGTTTGGCACAAAGGCTTGCTGAACTTGTTACAAGTCATATGGGTGGTCCTGTAAAGGATGCTAATATTATGTTAGCAAGATGGACAGAAACAAGAGCAGAGTTAAGGACTAATCTTCACACAATTGTATTGCCTCTTGGGTCCTTAAATATTGGGCTCTCTAGACATCGTGCTTTGCTTTTCAAGGTATTAGCTGACAACATTAACATGCCTTGTAGACTGGTAAAAGGGAGTCATTACACTGGTGTGGAGGATGATGCTGTCAACATTATAAAGTTGGAGGGTGAAAGGGAGTTTTTGGTTGATCTCATGGCTGCTCCAGGGACACTTATCCCACTTATGCCAGCTGATATTTTGAGCACCAAGGATAGTGCCTTTAACAAGGCTTTTAATCCCAAGATTCTACCCAATTTACCTTCCTCCAAGGATACTGAATTTTCTTACTCAAGACCTATCCAACCATCTCATGGTGAAGGTAGTAGTCAAAATCCTGTGATAAAAGATCATTCACTGCCTTGGAATGGAAAATCATATTTTGAGAAGTCAGAGCCTTCAAACATAGGTTTGAGAAGAGACACTGGCGTTGGTCCTTCTAAAATTTCTAATAGAGGGTCCCCTAATCAACTGGAGAATTTGCCTGCCTTGTCTGGTACTTCTCTGTACAAAGGGACCCTCGGAATGAATACAATTGGTGATGGGACGAGACTTAATGTCAATGTTGTACCGTATACTCAAAACAGCCCCAATGACTCTCGAAACCTTTTTGCAGATCTTAACCCATTCCAAATAAAAGGAATGGGGAAGGCCTCTGGGCTTAACAAACCCGTAGAAATTAAACCTCCTGAGATTAAAAATACTAAAAATAATACTGTTTCTGGTCGGCCCCCAGTGCTACTGACAAAGAAGAACCGTCATGCCTATAATGAAGACCCCAGGAAAACTAATTATAACCCTAATGAGTACAAATCTCCCTTGTTTGTTTCCAATGGTTCTGCTACATCTGAAAATGTTGACCTTAGTTCCAAACCATTATATAATTCAAATTTAAATAATGATGTAAATGTTCAAACTTTGGCACATGGTACTGGTTCAGTTTCATCATCTGTACCTGAACTGAGCCAGATTGAGGATCACAATGCTGATTTTAACCAGGGGGGTCTGGAAAATTCTCAAAACTTCATGGTAGAGACAGTTAGAGAACCTGATAATGCCGAAATAAGACATCATGACCAGAGGAAGCATACTTATGACAGATTCATGGGAAACAATTTCAAACTAAAGGAACCAGAGAGTTCTAGCTCATCAATTGATTCCATCACAAACAGGGTGGATCAAATATTGGATGATGTAGACGTTGGTGAATGTGAGATTCCATGGGAGGATCTCTTTCTTGGTGAAAGAATTGGTATAGGTTCATACGGTGAGGTATACCATGCCGACATGAATGGCACGGAGGTTGCTGTAAAGAAATTTTTGGATCAGGATTTTTCAGGCGCTGCATTGTCTGAATTCAAAAGAGAAGTACGGATAATGCGTAGGTTACGTCATCCAAATATTGTTCTTTTTATGGGTGCTGTTACTCGTCCTCCTAATCTCTCAATCATTTCGGAGTATTTACCAAGAGGAAGCTTGTACCGATTACTTCATCGCCCTAATTGTCAGATCGATGAGAAACGAAGAATAAAAATGGCTTTGGACGTGGCTAGGGGCATGAATTGCTTACACACCAGCACACCTATAATTGTTCACCGAGATCTAAAGTCTCCGAATCTTTTGGTTGATAAGAACTGGAATGTTAAGGTATGCGATTTTGGGTTGTCAAGGTTGAAGCACAACACTTTTTTGTCATCCAAGTCAACTGCTGGAACGCCGGAGTGGATGGCTCCTGAAGTTCTCCGCAATGAACCCTCAAATGAAAAATGCGATGTTTATAGTTTTGGAGTCATCCTGTGGGAGCTTGCTACACTAAGGTTGCCATGGACTGGAATGAATCCTATGCAAGTTGTTGGTGCCGTTGGTTTTCAAAATCGTAGACTTGAAATTCCTAAGGAAGTCGATCCTATAGTTGCAAGAATAATATGGGAATGTTGGCAACAGGATCCAAATTTGCGGCCCTCGTTTGCACAACTCACAGTGGCTCTAAAGCCTCTGCAGCGTCTGGTTATCCCATCGTATCAAGACCAGGTACCTCCACTCGTGCCGCAGGAGATTTCTGTAAATTCCACCCCATGA 2979 0.4414 MSERVKKEKPTEKRERMKNIFKKLHIGGNHDPQRSNDNSPPVPSPSCAADHSQSSGATPASPSSASATASASTAVSTPGGGLSPVVNRQDFFSSEEEFQVQLALAISASNSEFRDDPEKDQIHAATLLSLGGLRIDSARSKNDASEALSRQYWVSCVLELRFGALYVSRTSYSSEEYNVLDYEEKVVDGFYDVYGPSNDSVMQGKMPSRTDLEANPGGSEVVIVNRTIDPALEELIQIAQCIALDCPVTSLAQRLAELVTSHMGGPVKDANIMLARWTETRAELRTNLHTIVLPLGSLNIGLSRHRALLFKVLADNINMPCRLVKGSHYTGVEDDAVNIIKLEGEREFLVDLMAAPGTLIPLMPADILSTKDSAFNKAFNPKILPNLPSSKDTEFSYSRPIQPSHGEGSSQNPVIKDHSLPWNGKSYFEKSEPSNIGLRRDTGVGPSKISNRGSPNQLENLPALSGTSLYKGTLGMNTIGDGTRLNVNVVPYTQNSPNDSRNLFADLNPFQIKGMGKASGLNKPVEIKPPEIKNTKNNTVSGRPPVLLTKKNRHAYNEDPRKTNYNPNEYKSPLFVSNGSATSENVDLSSKPLYNSNLNNDVNVQTLAHGTGSVSSSVPELSQIEDHNADFNQGGLENSQNFMVETVREPDNAEIRHHDQRKHTYDRFMGNNFKLKEPESSSSSIDSITNRVDQILDDVDVGECEIPWEDLFLGERIGIGSYGEVYHADMNGTEVAVKKFLDQDFSGAALSEFKREVRIMRRLRHPNIVLFMGAVTRPPNLSIISEYLPRGSLYRLLHRPNCQIDEKRRIKMALDVARGMNCLHTSTPIIVHRDLKSPNLLVDKNWNVKVCDFGLSRLKHNTFLSSKSTAGTPEWMAPEVLRNEPSNEKCDVYSFGVILWELATLRLPWTGMNPMQVVGAVGFQNRRLEIPKEVDPIVARIIWECWQQDPNLRPSFAQLTVALKPLQRLVIPSYQDQVPPLVPQEISVNSTP 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02153 992 Pfam Ethylene-responsive protein kinase Le-CTR1 176 360 - -
Vimu3g02153 992 ProSitePatterns Serine/Threonine protein kinases active-site signature. 830 842 IPR008271 GO:0004672|GO:0006468
Vimu3g02153 992 ProSitePatterns Protein kinases ATP-binding region signature. 717 739 IPR017441 GO:0005524
Vimu3g02153 992 ProSiteProfiles Protein kinase domain profile. 711 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02153 992 FunFam Serine/threonine-protein kinase isoform 1 702 789 - -
Vimu3g02153 992 MobiDBLite consensus disorder prediction 1 81 - -
Vimu3g02153 992 MobiDBLite consensus disorder prediction 521 545 - -
Vimu3g02153 992 SUPERFAMILY Protein kinase-like (PK-like) 701 983 IPR011009 -
Vimu3g02153 992 Pfam Protein tyrosine and serine/threonine kinase 713 961 IPR001245 GO:0004672|GO:0006468
Vimu3g02153 992 MobiDBLite consensus disorder prediction 390 416 - -
Vimu3g02153 992 FunFam Serine/threonine-protein kinase CTR1 790 973 - -
Vimu3g02153 992 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 75 967 - -
Vimu3g02153 992 PRINTS Tyrosine kinase catalytic domain signature 785 798 IPR001245 GO:0004672|GO:0006468
Vimu3g02153 992 PRINTS Tyrosine kinase catalytic domain signature 824 842 IPR001245 GO:0004672|GO:0006468
Vimu3g02153 992 PRINTS Tyrosine kinase catalytic domain signature 871 881 IPR001245 GO:0004672|GO:0006468
Vimu3g02153 992 PRINTS Tyrosine kinase catalytic domain signature 890 912 IPR001245 GO:0004672|GO:0006468
Vimu3g02153 992 PRINTS Tyrosine kinase catalytic domain signature 934 956 IPR001245 GO:0004672|GO:0006468
Vimu3g02153 992 MobiDBLite consensus disorder prediction 31 81 - -
Vimu3g02153 992 SMART serkin_6 711 966 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02153 992 CDD STKc_MAP3K-like 717 960 - -
Vimu3g02153 992 Gene3D Transferase(Phosphotransferase) domain 1 790 972 - -
Vimu3g02153 992 Gene3D Phosphorylase Kinase; domain 1 704 788 - -
Vimu3g02153 992 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02153 Vimu-Chr3 36333506 36342146 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02153 17 947 MAP Kinase Kinase Kinase AT1G08720 54.536 0.0 892
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vimu3g02153 PK_Tyr_Ser-Thr 1.9e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02153 - - gmx:100818780 1638.62