LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu3g02147	ATGGGGTGTATAATTGGCAAAGAAGTGTCATCGGGAATAATCTCCGAGGTGAAGGAGGAGAAGAGTGTGAGTGTTGAATCCGACAAGAAAGTTGATGAAGTGGCCACAAGCAGAGCTGAGGAGAACGTGGGAGAGGCTCTGAATGGTGAGAAGGAGAAAAAGAAGGAGAAGGAAGAGAATGGTGGTGGCGATGGAGTCCGGGGAACGAAGGGTGACAGAAGAAGGTCAAAGCCAAATCCAAGGCTAAGTAATCCACCGAAGCATTTGCAGGGGGAGCAAGTAGCAGCTGGGTGGCCACCTTGGCTAACAGCAGTGTGTGGTGAAGCCCTTAGTGGGTGGATTCCACGAAAGGCTGACACATTTGAGAAAATTGATAAGATTGGTCAAGGAACTTATAGTAATGTATACAAAGCTAAAGACACATTGACGGGTAAGATTGTTGCACTGAAGAAGGTTCGATTTGACAATTTGGAACCTGAGAGTGTAAAATTCATGGCCAGAGAGATTCTTATTTTGAGAAGATTGGATCATCCCAATGTTATAAAGCTAGAAGGTTTAGTTACATCCAGAATGTCCTTGAGTTTGTACCTGGTGTTTGATTACATGGTGCATGATTTAGCTGGACTTGCTGCAAGCCCTGACATAAAATTTACAGAGCCACAGGTTAAATGTTACACACATCAACTGCTATCAGGACTTGAGCACTGTCATAGTCGAAACGTACTTCACCGTGATATAAAAGGATCAAATCTTCTTATTAACGATGAAGGGACACTTAAAATTGCTGACTTTGGCCTTGCATCTTTCTTTGACCCAGACCGCAGGCAACCCATGACTAGTCGTGTAGTTACCCTTTGGTACCGCCCCCTTGAGTTGCTTCTTGGTGCCACAGAATATGGTGTGGCCATCGACCTTTGGAGTGTTGGTTGCATTTTAGGAGAGTTATTGGCTGGGAAACCTATTATGCCTGGACGTACAGAGGTGGAACAACTGCATAAGATATACAAACTTTGTGGATCACCTTCTGATGAGTATTGGAAGAAGTTAAAGATGCCTAATGCTACCTTGTTTAAACCTCGACAGCCATACAGGAGGTGTATAAGAGAGACATTTAAAGATTTTCCACCTTCATCTTTTCCCCTTATCGAGACTCTTCTTGCAATTGATCCAGCAGAACGAAAGAGTGCCTCAGATGCTCTAAGAAGTGAGTTCTTTACCACAGAACCTTATGCTTGTGATCCTCTTAGTCTTCCAAAATATCCCCCAACAAAGGAAATGGATGCTAAACGACGGGATGATGAAGCAAGGAGATCAAGAGCTGCAGGCAAAACTGGTGTTGATGGTCCAAAGAAGCATCGGATTCGTGATCGCGCTGCCAAAGCTGCTCCTGCTCCAGAAGCCAATGCTGAGCTTCAATCCAATATGGATAGAAGGAGATTAATCAGTCATGCAAATGCAAAGAGCAAGAGTGAAAAGTTTCCTCCACCGCATGAAGATGGACAACTTGGATTTCCTTTGGGATCTTCTAATCACATTGATCCAGATATTATTCCTTCCGACATCTCTTTGGGTTCAACCTCGTACACCTATTCAAAGGAACCATTCCAAGCTTGGTCTGGTCCAATTGGTAATCCTGCCAGCATTAGTAAGCAGAAGAAACACACTACTGGTGATGATGCATTGGATTTGTCAAAATCATACAAGGGAACTATCAAGCATAAAGTTAAAGGAAAGAAAATCCCAGCCTAG	1749	0.4368	MGCIIGKEVSSGIISEVKEEKSVSVESDKKVDEVATSRAEENVGEALNGEKEKKKEKEENGGGDGVRGTKGDRRRSKPNPRLSNPPKHLQGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVIKLEGLVTSRMSLSLYLVFDYMVHDLAGLAASPDIKFTEPQVKCYTHQLLSGLEHCHSRNVLHRDIKGSNLLINDEGTLKIADFGLASFFDPDRRQPMTSRVVTLWYRPLELLLGATEYGVAIDLWSVGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEYWKKLKMPNATLFKPRQPYRRCIRETFKDFPPSSFPLIETLLAIDPAERKSASDALRSEFFTTEPYACDPLSLPKYPPTKEMDAKRRDDEARRSRAAGKTGVDGPKKHRIRDRAAKAAPAPEANAELQSNMDRRRLISHANAKSKSEKFPPPHEDGQLGFPLGSSNHIDPDIIPSDISLGSTSYTYSKEPFQAWSGPIGNPASISKQKKHTTGDDALDLSKSYKGTIKHKVKGKKIPA	582

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu3g02147	582	MobiDBLite	consensus disorder prediction	472	496	-	-
	Vimu3g02147	582	SMART	serkin_6	121	405	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu3g02147	582	MobiDBLite	consensus disorder prediction	17	79	-	-
	Vimu3g02147	582	MobiDBLite	consensus disorder prediction	415	511	-	-
	Vimu3g02147	582	MobiDBLite	consensus disorder prediction	423	460	-	-
	Vimu3g02147	582	Gene3D	Transferase(Phosphotransferase) domain 1	204	444	-	-
	Vimu3g02147	582	PANTHER	CELL DIVISION PROTEIN KINASE	119	409	-	-
	Vimu3g02147	582	CDD	STKc_CDK9_like	121	405	-	-
	Vimu3g02147	582	SUPERFAMILY	Protein kinase-like (PK-like)	116	411	IPR011009	-
	Vimu3g02147	582	ProSitePatterns	Protein kinases ATP-binding region signature.	127	150	IPR017441	GO:0005524
	Vimu3g02147	582	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	241	253	IPR008271	GO:0004672\|GO:0006468
	Vimu3g02147	582	Gene3D	Phosphorylase Kinase; domain 1	108	203	-	-
	Vimu3g02147	582	Pfam	Protein kinase domain	121	405	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu3g02147	582	FunFam	probable serine/threonine-protein kinase At1g54610	108	203	-	-
	Vimu3g02147	582	MobiDBLite	consensus disorder prediction	17	93	-	-
	Vimu3g02147	582	FunFam	probable serine/threonine-protein kinase At1g54610	204	445	-	-
	Vimu3g02147	582	MobiDBLite	consensus disorder prediction	536	562	-	-
	Vimu3g02147	582	ProSiteProfiles	Protein kinase domain profile.	121	405	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu3g02147	Vimu-Chr3	36303459	36308770	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu3g02147	113	443	Core Cell Cycle Gene Families	AT5G10270	51.873	1.58e-118	359

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Vimu3g02147		Pkinase	2.9e-63	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu3g02147	K08819		-	gmx:100817289	956.822