Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02145 ATGGTCTTTGAAATCAGTTCTGTTGTTTCAAAGTTGCAAATGGTATCCACTTCGGACCATTCCTCCGTTGTCTCCATGAACTTATTTGTGGCTCTTCTTTGTGCTTGTATTGTCATTGGCCATCTTCTTGAGGAGAATCGGTGGATGAACGAGTCTATCACTGCCCTTTTGATTGGTATTTCCACTGGCGTAATCATTTTGCTGCTTAGTGGTGGTAAAAGCTCACATATTCTTGTTTTCAGTGAAGATCTTTTCTTCATATACCTTCTGCCGCCTATAATATTTAATGCTGGGTTTCAGGTGAAAAAGAAGCAGTTTTTTGTTAACTTCATGACCATCATATTGTTTGGTGCTATTGGTACATTAATATCTTGTGCGGTCATAACTTTGGGTGCGTCACAAATTTTTGAGAAGTTGGATATTGGTCCACTGGAATTAGGGGATTACCTAGCAATTGGTGCAATATTTGCTGCGACAGATTCTGTTTGCACATTGCAGGTGCTAAATCAGGATGAGACACCTTTGCTGTACAGTCTTGTATTTGGGGAGGGTGTTGTGAATGATGCTACATCAGTGGTGCTTTTCAATGCAATCCAAAGCTTTGACCTCAACCACATAGACCCTTCAATAGCTTTGCACTTTTTGGGCAATTTCTTGTATTTGTTTGTCGCAAGCACAATGCTTGGAGTGTTGACAGGTCTACTCAGTGCTTATATTATCAAAAAGCTGTATATTGGAAGGCACTCTACAGATCGTGAGGTTGCTCTTATGATGTTAATGGCGTACCTATCCTACATGCTAGCTGAATTATGCTATCTAAGTGGCATCCTCACAGTATTCTTTTGTGGGATTGTTATGTCTCATTATACCTGGCATAATGTGACTGAGAGTTCAAGAATCACTACCAAGCATTCTTTTGCAACCTTGTCCTTTGTTGCCGAGATCTTTATCTTCCTTTATGTGGGTATGGATGCCTTGGACATTGAAAAATGGAAATTCGTCAGTGATAGTCCTGGAACATCTATTGCAGCTAGTTCAGTATTGCTGGGCCTAGTTCTTGTTGGAAGAGCAGCCTTTGTTTTCCCCTTATCCTTTCTATCCAACTTGGCTAAAAAATCACCAAATGAGAAAATTAGCTTCAGACAGCAAGTGATTATTTGGTGGGCTGGTCTTATGAGGGGTGCTGTTTCAATGGCACTTGCATATAATCAGTTCACCATGTCGGGGCATACTTCACTGCGAAGCAATGCAGTCATGATCACTAGCACCATCACTGTTGTACTTTTCAGCACGGTGGTGTTTGGTTTGATGACTAAGCCACTCATAAGGCTTTTACTACCTCATACTCCAAATCATAAAGAAATAAACATCGTGATAGCCACAGATGCATCTACTCCAAAATCAGCCACTGTCCCACTTCTTGGGAGTGCTCAAGACTCTGAAGTCGATATTGATTCAATCCATCGACCAAGCAGCATCCGCGCATTGCTTAGAACTCCAACACACACTGTTCATCGATTGTGGCGTAAGTTCGATGATGCATTCATGCGTCCTGTTTTCGGTGGAAGGGGTTTTGTTCCTGTAGAACCTGGCTCTCCATCTGAACGTAATGGTCATCAATGGCGTTGA 1629 0.4174 MVFEISSVVSKLQMVSTSDHSSVVSMNLFVALLCACIVIGHLLEENRWMNESITALLIGISTGVIILLLSGGKSSHILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFVNFMTIILFGAIGTLISCAVITLGASQIFEKLDIGPLELGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLNHIDPSIALHFLGNFLYLFVASTMLGVLTGLLSAYIIKKLYIGRHSTDREVALMMLMAYLSYMLAELCYLSGILTVFFCGIVMSHYTWHNVTESSRITTKHSFATLSFVAEIFIFLYVGMDALDIEKWKFVSDSPGTSIAASSVLLGLVLVGRAAFVFPLSFLSNLAKKSPNEKISFRQQVIIWWAGLMRGAVSMALAYNQFTMSGHTSLRSNAVMITSTITVVLFSTVVFGLMTKPLIRLLLPHTPNHKEINIVIATDASTPKSATVPLLGSAQDSEVDIDSIHRPSSIRALLRTPTHTVHRLWRKFDDAFMRPVFGGRGFVPVEPGSPSERNGHQWR 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02145 542 PANTHER SODIUM/HYDROGEN EXCHANGER 16 520 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Vimu3g02145 542 Pfam Sodium/hydrogen exchanger family 30 442 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vimu3g02145 542 Gene3D - 146 197 - -
Vimu3g02145 542 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vimu3g02145 542 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vimu3g02145 542 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vimu3g02145 542 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vimu3g02145 542 NCBIfam sodium/hydrogen exchanger 3 24 452 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02145 Vimu-Chr3 36258289 36263623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02145 6 540 Antiporters AT3G05030 76.809 0.0 849
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02145 - - gmx:100816746 964.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02145 3 36258289 36263623 Vimu3g02145 3 36258289 36263623 ECH
Vimu2g01746 2 12535029 12538864 Vimu3g02145 3 36258289 36263623 PCT