Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02139 ATGGAGTGCAACAAGGATGAGGCTTTGAGGGCTAGAAAAATTGCTGAAGCTAGAATGCAAAGTGGTAAATTTCAAGAGGCTCTCAAGTTTGCTACCAAGGCCAAAAACCTTTATGCGGATGTGGGAAACATCAGCCATGTTCTTACGATTTGTGAGGTTCACAATGCTGCGCAGAGAAAACTCTCTCCCTCTGAAATGGATTGGTATGCGATTCTTCAGATTGAAAGACTGGCGGATGAAACAGCCATAAAGAAACAGTACAAGAGGCTTGCACTCCTACTTCATCCTGATAAAAATAAGTTTGCTGGTGCAGAAACTGCTTTCAAATTGGTTGGGCAAGCCAATGGGGTTTTGAGTGACCAAGCAAAACGTTCTTTGTATGACAAACAGTTTGCTGTCTCTGTGAGAAGCCGACCTGTGCCAGAATCCTCGGATTCCAAGAAGAAAGCTGTCCAGAAGACATTCTGGACACGTTGCCAACATTGTAATACTAAATACGAGCTCTTCATACCGTTTGTGAATTCACCCATACGCTGCAAAGAGTGTTCGAAGTCCTTTAAAGCTCGTGCTATTCCTTTGGTAAATATCCAGAAGGAGTCTCCAATGCATGGTCCCCCAAAACCAGCCTCTGAAAGTACTGGTGGAAAAACCCCTGGTGGAGGAGAACATGCTAGTGCCTTTGTAAGGCCAAATCCTATGTCTATGAAAAAATGTTCTTCTGGTGTTGGTGGTCCTCCATCCACAGGCACGGAATCACAAACCTCTAAAAATGTTGGAAGTAAAAGAGTTAGACAGTCAGCACCGGACTCAGGAGAAAGTTTCAAAGCTGGTAATATTTATGAGATGAAAGATGCTTATGTTCGGGAAAACGATATTTATCCTTCAGGACGTGATGCAGGGAGATCTTGTAGACAAAAGCAACATGTTTGA 930 0.4333 MECNKDEALRARKIAEARMQSGKFQEALKFATKAKNLYADVGNISHVLTICEVHNAAQRKLSPSEMDWYAILQIERLADETAIKKQYKRLALLLHPDKNKFAGAETAFKLVGQANGVLSDQAKRSLYDKQFAVSVRSRPVPESSDSKKKAVQKTFWTRCQHCNTKYELFIPFVNSPIRCKECSKSFKARAIPLVNIQKESPMHGPPKPASESTGGKTPGGGEHASAFVRPNPMSMKKCSSGVGGPPSTGTESQTSKNVGSKRVRQSAPDSGESFKAGNIYEMKDAYVRENDIYPSGRDAGRSCRQKQHV 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02139 309 CDD DnaJ 67 120 IPR001623 -
Vimu3g02139 309 SUPERFAMILY Chaperone J-domain 62 132 IPR036869 -
Vimu3g02139 309 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Vimu3g02139 309 PANTHER BNAC03G44070D PROTEIN 1 262 - -
Vimu3g02139 309 MobiDBLite consensus disorder prediction 197 279 - -
Vimu3g02139 309 Gene3D DnaJ domain 49 149 IPR036869 -
Vimu3g02139 309 MobiDBLite consensus disorder prediction 241 267 - -
Vimu3g02139 309 Pfam DnaJ domain 67 128 IPR001623 -
Vimu3g02139 309 SMART dnaj_3 66 123 IPR001623 -
Vimu3g02139 309 PRINTS DnaJ domain signature 87 102 IPR001623 -
Vimu3g02139 309 PRINTS DnaJ domain signature 69 87 IPR001623 -
Vimu3g02139 309 PRINTS DnaJ domain signature 103 123 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02139 Vimu-Chr3 36217729 36218658 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02139 4 247 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 32.075 3.21e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu3g02139 DnaJ 7.2e-20 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02139 - - pvu:PHAVU_007G183700g 455.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02139 3 36217729 36218658 Vimu3g02139 3 36217729 36218658 ECH
Vimu2g01754 2 12608013 12620901 Vimu3g02139 3 36217729 36218658 PCT