Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02127 ATGTTCCCAGACTTGAGGCATTTAGAATTGGAGAAAGAGAAAGAGAATGTGGCATCACCAAGAGGAGTCTTAGAAGTATGCATGAAAGACTTTGATTCTCGAATATTTGCTAAACCGGAAAAAAGTTGTTCAAGCACAAGGACACACTCTAACTGGACCAATTTTTTCAAACTTTTCAAGAAAAAATCTTTTAAGCGGCTAGGGACCCTCTCCAATATTAGTGTTCCAAAGATACCAAAATGGAAAAGCAGAAGTACTAGAGAAAATCACGCTTTAAGCAAGCTATGTAACTTCAACTCATCTTGGGTCACTTTTAGCCTTTCTGACCTCAGAAAAGCGACCAAAAATTTTGACAGTGAAAATATAATCGGAAGCGGTGGTTTTGCTGACGTTTACAAGGGGTGTCTCGAAGATGGACAATTAATAGCTGTGAAGAAATTGAATAAAGGAACCACAGAAGAAAAAACTGCGGGCTTTCTATCTGAGTTAGGCGTAATTGCTCACGTTGACCATCCTAATACTGCCAAGCTAGTTGGATGTTGTGTAGAAGGAGAAATGCATCTTGTCTTTGAACTATCTACACTAGGAAGTTTAGGATCTCTTCTTCATGGTTCAGATAAAAACAAACTAGATTGGAGTAAAAGGTATAAAATTGCTCTGGGAATAGCTGATGGTCTCCTCTATCTGCATGAGTGTTGTCACAGACGAATCATTCACAGAGATATTAAGGCAGAGAATATTCTAGTCACGGAGAATTTTGAGCCACAGATATGTGATTTTGGGCTTGCAAAGTGGTTACCTGAACAGTGGACTCACTATAATGTATCAAAATTTGAAGGCACATTTGGTTATTTTGCTCCTGAATATTTCATGCACGGAATAGTAGATGAAAAAACTGATGTTTATTCATTTGGGGTGCTGCTTTTGGAGATCATTTCCGGGCGCCCAGCGGTGAATGATTTGCAGCAAAATATTGTCTTATGGGCAAAACCTTTGCTTTGTGGCAATCATATGAAGGACCTTATTGATCCTTCACTGGGTGATGATTATGATAAAGGGCACTTGGGTTGTGTAATTGTAACTGCATCGCTATGTATTGAACAGAGTCCTATCTTACGTCCCAGAATGAGGCAGATTGTGACTTTACTAAGAGGGGAACAACACATTATGAAATCTACACGAGCAAGTGGAAGGAGGCTTTTGGAAAGAACGTACTCAGAAGAACTCTTGGATGTGCAAGAATACAACTCAACAAAATTTCTAAGAGATCTCAAGCGACATCAAGAAATTGCATTGGGTCTCGAGAACTAA 1311 0.3921 MFPDLRHLELEKEKENVASPRGVLEVCMKDFDSRIFAKPEKSCSSTRTHSNWTNFFKLFKKKSFKRLGTLSNISVPKIPKWKSRSTRENHALSKLCNFNSSWVTFSLSDLRKATKNFDSENIIGSGGFADVYKGCLEDGQLIAVKKLNKGTTEEKTAGFLSELGVIAHVDHPNTAKLVGCCVEGEMHLVFELSTLGSLGSLLHGSDKNKLDWSKRYKIALGIADGLLYLHECCHRRIIHRDIKAENILVTENFEPQICDFGLAKWLPEQWTHYNVSKFEGTFGYFAPEYFMHGIVDEKTDVYSFGVLLLEIISGRPAVNDLQQNIVLWAKPLLCGNHMKDLIDPSLGDDYDKGHLGCVIVTASLCIEQSPILRPRMRQIVTLLRGEQHIMKSTRASGRRLLERTYSEELLDVQEYNSTKFLRDLKRHQEIALGLEN 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02127 436 ProSiteProfiles Protein kinase domain profile. 117 391 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02127 436 SMART serkin_6 117 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02127 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672|GO:0006468
Vimu3g02127 436 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 93 192 - -
Vimu3g02127 436 PANTHER OS08G0249100 PROTEIN 13 425 IPR046958 -
Vimu3g02127 436 ProSitePatterns Protein kinases ATP-binding region signature. 123 146 IPR017441 GO:0005524
Vimu3g02127 436 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 194 397 - -
Vimu3g02127 436 Gene3D Transferase(Phosphotransferase) domain 1 194 403 - -
Vimu3g02127 436 SUPERFAMILY Protein kinase-like (PK-like) 93 383 IPR011009 -
Vimu3g02127 436 Pfam Protein tyrosine and serine/threonine kinase 120 326 IPR001245 GO:0004672|GO:0006468
Vimu3g02127 436 Gene3D Phosphorylase Kinase; domain 1 78 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02127 Vimu-Chr3 36135491 36138939 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02127 103 389 Receptor kinase-like Gene Family AT1G53420 43.537 4.23e-72 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vimu3g02127 PK_Tyr_Ser-Thr 9.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02127 - - gmx:100781529 709.523