Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02119 ATGGCTTTGTTACTGCCACCGCTTCATCTTTCAACTTCCTATCTCAGCACAAGCACCATCGTGGCTCTCTGTGTATTCTTCACCCTCCTAGGCACTTGTGTCATCATTGGCCATCTTCTGGAAGAGAATCGGTGGGCTAACGAATCCATCATTGCCCTCCTTCTGGGGTTGTGTGCTGGGACGGTGGTGTTGTTTGTGACTAACTTTAAAAGTGCCAAGATTTTAATATTCAGTGAAGACTTGTTCTTTCTCTACTTGCTTCCCCCTATCATTTTCAATGCCGGTTTCCAAGTCAAGAAGAAACAGTTCTTCAAGAATTTCACCATTATACTGCTCTTTGGAGTCATTGGAACAGTTATTTCGTTCTGTCTTATATCTGTCGGTGCCCTCATCCTCATTCAATGGATTGGAATAGCTAATCTTGGCCTAAAAGATTACCTGGCCATCGGTGCCATACTGTCAGCAACGGACTCAGTTTGTACATTGCAGGTTCTCAATCAAGATGAAACACCCTTGCTTTACAGCATTGTATTTGGGGAGGGAGTAGTAAATGATGCCACGTCTATTGTGCTTTTCAATTCGGTTCAATCCCTTGACTTCAGCAGCTCCAATTCTGTGACAGCCTTGAAATTGTTGGGGACCTTCCTTTACCTCTTCTGCACTAGTACTGCCCTTGGCATAGCAGTTGGCCTTTTAAGTGCTTATATTATGAAAAACCTCTACCTGGGAAGGCATTCTACTGATCGTGAACTTGCACTTATGATGTTGTTGGCATATTTGTCATATATGATCGCTGAGCTTTTGAGTCTCAGTGGGATATTGACTATTTTCTTCTGTGGCATTGTTATGTCACACTACACTTGGCACAATGTTACATTAAGCTCAAGGACAACAACCAAGCACGCCTTTGCAACCCTCTCATTCATTGCAGAAACTTTTATATTTATATGTGTTGGCATGGATGCTCTAGACATTGACAAATGGAAAAACAGTAAAGGCAGTGCAGGAATTTCAGTTGCTGTAAGTTCTACTTTGTTTGCATTAGTGTTGATTGGAAGAGCAGCTTTTGTGTTCCCTATTGCATACATTAAAAATCGTATCAATACAAGAGAGAATACCAGACTTGAATTTCGTTCACAGTTTGCAGAAGCCAAGAGTACATCATCAACTCAAGACTCTGCATTAATGATCACTTCTTCTATAATTGTGGTCTTGTTCAGCACTGTGGTATTTGGCTCCATTACTAAGCCACTGATAGAGGCTGTGCAACCAAGGCATCCAAAACCAACCAGTTTTGATTCCACTGATAACGTAGAAGATTTGAGATTCCTATTGCTCGAAAACAATGGTCCCATTAACCAAAGCAACAATATGCAAATTCAAAGGCAAAGTAGGATAAGGATGTTAATAAGCCATCCAAGCAAAACTGTTCACTACTTTTGGAGGAAATTTGATGACAAGTTTATGAGACCTGTGTTTGGTGGAAGGGGTTTTGTGCCTTTTGTTCCTGGCGAAGCAGCATAG 1524 0.414 MALLLPPLHLSTSYLSTSTIVALCVFFTLLGTCVIIGHLLEENRWANESIIALLLGLCAGTVVLFVTNFKSAKILIFSEDLFFLYLLPPIIFNAGFQVKKKQFFKNFTIILLFGVIGTVISFCLISVGALILIQWIGIANLGLKDYLAIGAILSATDSVCTLQVLNQDETPLLYSIVFGEGVVNDATSIVLFNSVQSLDFSSSNSVTALKLLGTFLYLFCTSTALGIAVGLLSAYIMKNLYLGRHSTDRELALMMLLAYLSYMIAELLSLSGILTIFFCGIVMSHYTWHNVTLSSRTTTKHAFATLSFIAETFIFICVGMDALDIDKWKNSKGSAGISVAVSSTLFALVLIGRAAFVFPIAYIKNRINTRENTRLEFRSQFAEAKSTSSTQDSALMITSSIIVVLFSTVVFGSITKPLIEAVQPRHPKPTSFDSTDNVEDLRFLLLENNGPINQSNNMQIQRQSRIRMLISHPSKTVHYFWRKFDDKFMRPVFGGRGFVPFVPGEAA 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02119 507 PRINTS Na+/H+ exchanger signature 81 92 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vimu3g02119 507 PRINTS Na+/H+ exchanger signature 110 118 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vimu3g02119 507 PRINTS Na+/H+ exchanger signature 95 109 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vimu3g02119 507 PRINTS Na+/H+ exchanger signature 150 160 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016020|GO:0055085
Vimu3g02119 507 PANTHER SODIUM/HYDROGEN EXCHANGER 23 493 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Vimu3g02119 507 Pfam Sodium/hydrogen exchanger family 29 420 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Vimu3g02119 507 Gene3D - 142 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02119 Vimu-Chr3 36098890 36104191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02119 10 505 Antiporters AT5G27150 58.687 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02119 K14724 - qsa:O6P43_026859 699.508