Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02117 GTATTGAGGTTGTTTGTTATGTGTTTGCCAGAGGGAGAGAGAGATAGAGAGAGAGCCATGGCACTGGAAGCAGTGGTCTTTCCACAATCACAAGACCCATTTGGTGTGAAGGACTTCTACAACTGCACTTTCTTGTCTGCTACTTCACCTAACTGGGGGGACTATGAACACATCAACATCAACATCGATAAAGAAGAACAACAAGGTTCCATCTCTACTTTTCTCGATAATAATAACAACCCTTATGGAGGAGATTGGACCAGCTCTTCATCCTCTATCTTACCCCACTTGAATGATCTTCAAGAAGCCACAGACCCCAGTAACACCACTCATAGCTTGGATACCTTAACCACTCGTCCCAAGAGGCGCAGAGCCAAAAGCAGAAAGAACAAGGAAGAAATTGAGAACCAAAGAATGACTCACATTGCTGTCGAGCGCAATAGAAGAAAACAGATGAATGAGTATCTTTCTGTTCTTCGCTCTCTCATGCCGGACTCTTATATCCAAAGGGTACTTCGCTTCTCTTTCTTTTGTTCTTACCTGTTTGTTTCTTTACTTGGTTCCTTCGAAATTAAAAATTTTGTTTGTTTTGTTTGGTCTGCTTGGCCATTGAAGGGTGATCAAGCTTCTATAATTGGAGGTGCTATTAACTTTGTCAAGGAGCTTGAGCAGAGGCTGCATTTGCTTGGTGCTCAGAAAGAAGGAGAGGGGAAATCTGATGCTGGTGGTGCAACCAACATGCCCTTTTCTGAGTTCTTCGCCTTTCCTCAGTATTCAACAAGTGGTGGTGGTGGTGGTGGCTCTGATAATTCTGCAACCGTAGGTGAAGAATTGGGTGAGGTTAAGTCTGGCATTGCTGACATAGAAGTGACCATGGTGGAAAGCCATGCAAATCTCAAAATAAGATCCAAGAAGCGCCCCAAACAACTCTTGAAGCTGGTCTCTGGTTTGCATACTATGCGCCTCACAATCTTGCACCTAAATGTTACCACCACTGGTGAAGTTGTACTCTACTCTCTAAGTGTTAAGGTAGAAGATGATTGCAAGTTGGGATCCGTTGATGATATTGCTGAAGCTGTGTACCAGACGCTGGATAGGATTCAGCAAGAGACAGTGTTGAATTAA 1125 0.4364 VLRLFVMCLPEGERDRERAMALEAVVFPQSQDPFGVKDFYNCTFLSATSPNWGDYEHININIDKEEQQGSISTFLDNNNNPYGGDWTSSSSSILPHLNDLQEATDPSNTTHSLDTLTTRPKRRRAKSRKNKEEIENQRMTHIAVERNRRKQMNEYLSVLRSLMPDSYIQRVLRFSFFCSYLFVSLLGSFEIKNFVCFVWSAWPLKGDQASIIGGAINFVKELEQRLHLLGAQKEGEGKSDAGGATNMPFSEFFAFPQYSTSGGGGGGSDNSATVGEELGEVKSGIADIEVTMVESHANLKIRSKKRPKQLLKLVSGLHTMRLTILHLNVTTTGEVVLYSLSVKVEDDCKLGSVDDIAEAVYQTLDRIQQETVLN 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02117 374 PANTHER MAX DIMERIZATION, MAD 89 370 - -
Vimu3g02117 374 Gene3D - 121 236 IPR036638 GO:0046983
Vimu3g02117 374 Pfam Helix-loop-helix DNA-binding domain 137 222 IPR011598 GO:0046983
Vimu3g02117 374 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 136 234 IPR036638 GO:0046983
Vimu3g02117 374 MobiDBLite consensus disorder prediction 100 132 - -
Vimu3g02117 374 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 136 222 IPR011598 GO:0046983
Vimu3g02117 374 MobiDBLite consensus disorder prediction 100 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02117 Vimu-Chr3 36077988 36079212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02117 20 344 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 42.450 5.67e-67 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu3g02117 HLH 1.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02117 - - pvu:PHAVU_007G181900g 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02117 3 36077988 36079212 Vimu3g02117 3 36077988 36079212 ECH
Vimu2g01791 2 12930472 12931733 Vimu3g02117 3 36077988 36079212 PCT