Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu3g02116 | CTTCTCTTCCCTTTCATCACTCTCGATGACAAATCATTTATAAGCGCTTCCTCTTTTCCTTATTCACTTTATAAAATCTCACACCCTTTTTCTCTCTCTAAAGTTTCATCTTCCTCTACAGTGAGCCAAATGAAGAACTCAAATGGCTCTAGAGAAAATGGAGGAATTTACGTTTTTCTCCTCCTCCTCCTCCTCTTCATCGTTCCTCTTGCGGCTGCACAATCTACAAACAATAACCAAAATTACAACCGCTTCAGCCCTTCCATGGCCATCATAATCGTCATTCTCATCGCTGCGGTCTTCCTCATGGGCTTCTTCTCCATCTACATCCGTCACTGCGCCGACTCCCCCTCCGCAAGCATCCGCAACCTCACCGGAGCCACCTCCCGCCCGCGCCGTGGCCTCGACCAGGCTGTCATCGACACTTTCCCCACGCTGGAGTACTCCGTGGTGAAGATCCACAAGCTTGGAAAGGGGACGCTGGAGTGCGCGGTGTGCTTAAACGAGTTCGAGGACACCGAAACGCTGCGTTTGATCCCCAAGTGCGATCACGTGTTTCACCCGGAGTGCATCGACGAGTGGCTCTCCTCCCACACTACCTGCCCCGTTTGCCGCGCTAACCTCGTCCCCGAGCCCGGAGACTCCGTCAGAGGAATTCCAGTTCTCAATGCTCCTAACGACATCGAAGCCCAATCCGAAGCCCAACCCGAGGCCCACAACGACGCCGTCGAGCCTCTTCCCGTACAACAGCAAGAGCCTAAGCTTCCGATTTCCTCCGAACCCCCTCAGGTGCTCAGCCTAAACCAGACGCTGAACCGGAACCGCACCAGAGGCTCCCGGTCGGGCCGCCCCCGCTGGTTCCCCCGCTCTCACTCGACCGGTCATTCGCTGGTCCAACCCGGCGAGGACACTGAGAGGTACACCTTGAGGCTTCCCGAGGAAGTTAGAAAACAGATACTTCTCAACCCGGAACTGCATCGAGCGAGAAGCTTGGTTATGTTGCCCAGGGAAGGTAGTTCGCGGCGTGGATATCGAACCGGCGAGGGAAGTAGCAGAGGGAGGTCTTCGCGGCGGTTGGACCGGGGGTTTAAGTCCGACCGCTGGGTTTTCACTATGGCGCCTCCTTTCTTAGTGAGGGCCTCTTCCGTTAGGTCTCCAAGGGTGGCCAATAACGGCGGCGCAGGAACATCTGCTGCTGCGCCCTTTCCGCCGCCGGCTGCTGTGGATTCTGTTTAA | 1236 | 0.5599 | LLFPFITLDDKSFISASSFPYSLYKISHPFSLSKVSSSSTVSQMKNSNGSRENGGIYVFLLLLLLFIVPLAAAQSTNNNQNYNRFSPSMAIIIVILIAAVFLMGFFSIYIRHCADSPSASIRNLTGATSRPRRGLDQAVIDTFPTLEYSVVKIHKLGKGTLECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLSSHTTCPVCRANLVPEPGDSVRGIPVLNAPNDIEAQSEAQPEAHNDAVEPLPVQQQEPKLPISSEPPQVLSLNQTLNRNRTRGSRSGRPRWFPRSHSTGHSLVQPGEDTERYTLRLPEEVRKQILLNPELHRARSLVMLPREGSSRRGYRTGEGSSRGRSSRRLDRGFKSDRWVFTMAPPFLVRASSVRSPRVANNGGAGTSAAAPFPPPAAVDSV | 411 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu3g02116 | 411 | MobiDBLite | consensus disorder prediction | 336 | 358 | - | - | |
Vimu3g02116 | 411 | Pfam | Ring finger domain | 162 | 205 | IPR001841 | - | |
Vimu3g02116 | 411 | MobiDBLite | consensus disorder prediction | 252 | 277 | - | - | |
Vimu3g02116 | 411 | ProSiteProfiles | Zinc finger RING-type profile. | 163 | 205 | IPR001841 | - | |
Vimu3g02116 | 411 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 75 | 235 | - | - | |
Vimu3g02116 | 411 | MobiDBLite | consensus disorder prediction | 341 | 358 | - | - | |
Vimu3g02116 | 411 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 123 | 210 | IPR013083 | - | |
Vimu3g02116 | 411 | SMART | ring_2 | 163 | 204 | IPR001841 | - | |
Vimu3g02116 | 411 | MobiDBLite | consensus disorder prediction | 382 | 411 | - | - | |
Vimu3g02116 | 411 | FunFam | E3 ubiquitin-protein ligase ATL6 | 123 | 211 | - | - | |
Vimu3g02116 | 411 | SUPERFAMILY | RING/U-box | 156 | 211 | - | - | |
Vimu3g02116 | 411 | MobiDBLite | consensus disorder prediction | 251 | 304 | - | - | |
Vimu3g02116 | 411 | CDD | RING-H2_EL5-like | 162 | 205 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu3g02116 | Vimu-Chr3 | 36042469 | 36044579 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu3g02116 | 55 | 411 | Rapid Response to Elicitors | AT3G05200 | 46.883 | 5.42e-96 | 291 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu3g02116 | K10664 | - | gmx:100810865 | 512.301 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu3g02116 | 3 | 36042469 | 36044579 | Vimu3g02116 | 3 | 36042469 | 36044579 | ECH | |
Vimu2g01794 | 2 | 12975077 | 12977643 | Vimu3g02116 | 3 | 36042469 | 36044579 | PCT |