Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02116 CTTCTCTTCCCTTTCATCACTCTCGATGACAAATCATTTATAAGCGCTTCCTCTTTTCCTTATTCACTTTATAAAATCTCACACCCTTTTTCTCTCTCTAAAGTTTCATCTTCCTCTACAGTGAGCCAAATGAAGAACTCAAATGGCTCTAGAGAAAATGGAGGAATTTACGTTTTTCTCCTCCTCCTCCTCCTCTTCATCGTTCCTCTTGCGGCTGCACAATCTACAAACAATAACCAAAATTACAACCGCTTCAGCCCTTCCATGGCCATCATAATCGTCATTCTCATCGCTGCGGTCTTCCTCATGGGCTTCTTCTCCATCTACATCCGTCACTGCGCCGACTCCCCCTCCGCAAGCATCCGCAACCTCACCGGAGCCACCTCCCGCCCGCGCCGTGGCCTCGACCAGGCTGTCATCGACACTTTCCCCACGCTGGAGTACTCCGTGGTGAAGATCCACAAGCTTGGAAAGGGGACGCTGGAGTGCGCGGTGTGCTTAAACGAGTTCGAGGACACCGAAACGCTGCGTTTGATCCCCAAGTGCGATCACGTGTTTCACCCGGAGTGCATCGACGAGTGGCTCTCCTCCCACACTACCTGCCCCGTTTGCCGCGCTAACCTCGTCCCCGAGCCCGGAGACTCCGTCAGAGGAATTCCAGTTCTCAATGCTCCTAACGACATCGAAGCCCAATCCGAAGCCCAACCCGAGGCCCACAACGACGCCGTCGAGCCTCTTCCCGTACAACAGCAAGAGCCTAAGCTTCCGATTTCCTCCGAACCCCCTCAGGTGCTCAGCCTAAACCAGACGCTGAACCGGAACCGCACCAGAGGCTCCCGGTCGGGCCGCCCCCGCTGGTTCCCCCGCTCTCACTCGACCGGTCATTCGCTGGTCCAACCCGGCGAGGACACTGAGAGGTACACCTTGAGGCTTCCCGAGGAAGTTAGAAAACAGATACTTCTCAACCCGGAACTGCATCGAGCGAGAAGCTTGGTTATGTTGCCCAGGGAAGGTAGTTCGCGGCGTGGATATCGAACCGGCGAGGGAAGTAGCAGAGGGAGGTCTTCGCGGCGGTTGGACCGGGGGTTTAAGTCCGACCGCTGGGTTTTCACTATGGCGCCTCCTTTCTTAGTGAGGGCCTCTTCCGTTAGGTCTCCAAGGGTGGCCAATAACGGCGGCGCAGGAACATCTGCTGCTGCGCCCTTTCCGCCGCCGGCTGCTGTGGATTCTGTTTAA 1236 0.5599 LLFPFITLDDKSFISASSFPYSLYKISHPFSLSKVSSSSTVSQMKNSNGSRENGGIYVFLLLLLLFIVPLAAAQSTNNNQNYNRFSPSMAIIIVILIAAVFLMGFFSIYIRHCADSPSASIRNLTGATSRPRRGLDQAVIDTFPTLEYSVVKIHKLGKGTLECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLSSHTTCPVCRANLVPEPGDSVRGIPVLNAPNDIEAQSEAQPEAHNDAVEPLPVQQQEPKLPISSEPPQVLSLNQTLNRNRTRGSRSGRPRWFPRSHSTGHSLVQPGEDTERYTLRLPEEVRKQILLNPELHRARSLVMLPREGSSRRGYRTGEGSSRGRSSRRLDRGFKSDRWVFTMAPPFLVRASSVRSPRVANNGGAGTSAAAPFPPPAAVDSV 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02116 411 MobiDBLite consensus disorder prediction 336 358 - -
Vimu3g02116 411 Pfam Ring finger domain 162 205 IPR001841 -
Vimu3g02116 411 MobiDBLite consensus disorder prediction 252 277 - -
Vimu3g02116 411 ProSiteProfiles Zinc finger RING-type profile. 163 205 IPR001841 -
Vimu3g02116 411 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 75 235 - -
Vimu3g02116 411 MobiDBLite consensus disorder prediction 341 358 - -
Vimu3g02116 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 210 IPR013083 -
Vimu3g02116 411 SMART ring_2 163 204 IPR001841 -
Vimu3g02116 411 MobiDBLite consensus disorder prediction 382 411 - -
Vimu3g02116 411 FunFam E3 ubiquitin-protein ligase ATL6 123 211 - -
Vimu3g02116 411 SUPERFAMILY RING/U-box 156 211 - -
Vimu3g02116 411 MobiDBLite consensus disorder prediction 251 304 - -
Vimu3g02116 411 CDD RING-H2_EL5-like 162 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02116 Vimu-Chr3 36042469 36044579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02116 55 411 Rapid Response to Elicitors AT3G05200 46.883 5.42e-96 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02116 K10664 - gmx:100810865 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02116 3 36042469 36044579 Vimu3g02116 3 36042469 36044579 ECH
Vimu2g01794 2 12975077 12977643 Vimu3g02116 3 36042469 36044579 PCT