Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02113 ATGGAAGTTAATACTACAGCCACCGTACCTGCAGGGCCACCAGCTAAGAACCATTCTTTCACACAGCACCGCTTACATTCAGAAAGACAGAGACATAGCCACGGCCATTTCCCCACCAAAACCATTCTCATTACCGTCTCATTCGTTACCTTAGTTACGGTCCTATTTGTCATTTTTGTGGTCCTATTCTTGATCCGTCGTCAAAAATCTTCCTCCAAAAGTGGCACTTGCAAAGAAGACAGCACAGAGCTTCATGACACAAGCAGCAGGCTCATTACTTCATCAACGTTGAATTCTAGCCCAGGCTTTAAAATTCAGAAGCTAATCCATAAATGCTTGGAGACATTTATTGTAGAAGTAAAGAGTGGGTGTCTTCACGGGGGAAATTTGGGCAGGACCCCAGCACCTACATTTCGAGGAGTCCAAGTGTTCACATATAGGGAACTAGAAATTGCTACAGACGGATTCAGTGAAAGAAATGTGATTGGTGGTAATGGAGAACATGGCTTGATGTATAGAGGAGTTCTAAGTGATGGCACTTTGGCAGCAATTAAGTTGCTTCGTAGTGAGGGTAAGCAAGGGGAGCGTGCCTTCAGAATAGAGGTCGATCTCCTAAGTCGCTTGCACTCTCCATATTTGGTGGAGTTACTTGGCTATTGCGCTGACCAACACCACAGGTTATTGATTTTTGAATACATGCCCGATGGTACACTTCACCACCATCTTCACTCCCCCCACGATCAAACTCAACCGTTGGATTGGTGGGCCAGGATGAGGATAGCCCTTGATTGTGCTAGGGCACTGGAATTCCTTCATGAACATGCAGTCTCTCCTGTGATCCACAGAGACTTCAAGACTAACAACGTTCTGCTGGATCAAAATTTCCGTGCCAAGGTGTCTGATTTTGGATTGGCTAAGATGGGATCAGAGAAGAAGAACGGTCAGGTTTCAACCCGTGTGTTGGGGACCACTGGATATCTGGCACCAGAGTACGCCACGGGTAAGCTTACCACAAAGTCAGATGTTTACAGCTATGGTGTGGTTCTTCTCGAACTCCTCACGGGACGTGTGCCAGTTGATATCAAGCGGGCCCCAGGAGAACACGTCCTTGTCTCTTGGGCTCTTCCACGGTTGACAAACAGAGAAAAGGTGATTGAAATGGTTGATCCAGCTCTACGCGGACAGTACTCAAAGAAGGATTTAATTCAGATAGCTGCCATTGCAGCAATGTGCATACAGCCAGAAGCTGATTACAGGCCGCTCATGACAGATGTTGTACAATCACTAATACCACTTGTTAGGAACCCATCCTCCCTTAGTTCTAGCTCCCTACGATTTCAGAAACAAACGCCAAAGAGCAGAAGCAGCCTAGAAATAAACTAA 1383 0.4628 MEVNTTATVPAGPPAKNHSFTQHRLHSERQRHSHGHFPTKTILITVSFVTLVTVLFVIFVVLFLIRRQKSSSKSGTCKEDSTELHDTSSRLITSSTLNSSPGFKIQKLIHKCLETFIVEVKSGCLHGGNLGRTPAPTFRGVQVFTYRELEIATDGFSERNVIGGNGEHGLMYRGVLSDGTLAAIKLLRSEGKQGERAFRIEVDLLSRLHSPYLVELLGYCADQHHRLLIFEYMPDGTLHHHLHSPHDQTQPLDWWARMRIALDCARALEFLHEHAVSPVIHRDFKTNNVLLDQNFRAKVSDFGLAKMGSEKKNGQVSTRVLGTTGYLAPEYATGKLTTKSDVYSYGVVLLELLTGRVPVDIKRAPGEHVLVSWALPRLTNREKVIEMVDPALRGQYSKKDLIQIAAIAAMCIQPEADYRPLMTDVVQSLIPLVRNPSSLSSSSLRFQKQTPKSRSSLEIN 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02113 460 Gene3D Transferase(Phosphotransferase) domain 1 233 448 - -
Vimu3g02113 460 Pfam Protein tyrosine and serine/threonine kinase 164 429 IPR001245 GO:0004672|GO:0006468
Vimu3g02113 460 CDD STKc_IRAK 164 432 - -
Vimu3g02113 460 ProSiteProfiles Protein kinase domain profile. 157 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu3g02113 460 SUPERFAMILY Protein kinase-like (PK-like) 137 429 IPR011009 -
Vimu3g02113 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 279 291 IPR008271 GO:0004672|GO:0006468
Vimu3g02113 460 Gene3D Phosphorylase Kinase; domain 1 131 232 - -
Vimu3g02113 460 MobiDBLite consensus disorder prediction 1 32 - -
Vimu3g02113 460 FunFam Serine/threonine-protein kinase PBS1 125 232 - -
Vimu3g02113 460 PANTHER OS07G0668900 PROTEIN 137 439 - -
Vimu3g02113 460 FunFam Receptor-like serine/threonine-protein kinase ALE2 233 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02113 Vimu-Chr3 36013701 36016607 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02113 124 453 Receptor kinase-like Gene Family AT3G58690 61.538 1.02e-146 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vimu3g02113 PK_Tyr_Ser-Thr 5.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02113 - - gmx:100499645 729.169