Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02111 ATGGATCATCAAGGGCATGGGCATGGACAGAACCCATCTCTGGGAGTTGTTGGGAGTGGAACTCAACTCACTTATGGTTCTAATCCATACCAGGGCAGCCACATAACAGGTTCACCTGGGATGGTTGTTGCATCACCTGGGACCATTCAATCCACTGGTCAAGCAACCACAACTCAACTAGGACAGCATCAACTTGCTTATCAGCACATGCATCAGCAACAACAACAGCAGATGCAGCAGAGACTCCAAGTCTTTTGGACAAATCAATATCAAGAAATTGAGAAAGTGACTGATTTCAAGAACCATAGTCTTCCCTTGGCAAGGATAAAAAAGATTATGAAGGCAGATGAAGATGTCAGAATGATATCAGCTGAGGCACCTGTCATATTTGCAAGGGCATGTGAAATGTTCATCTTGGAGTTAACCCTGCGTTCTTGGAACCACACTGAAGAGAACAAAAGGAAAACACTTCAAAAGAATGACATTGCAGCAGCCATCACAAGAACTGATATCTTTGATTTCTTGGTTGACATTGTGCCTAGGGAGGACTATAAAGATGAAGTGCTTGCATCAATGCCAAGAGGAACTGTACCTGTTACAGCCCCCCCTGAGGCACTTCCTTACTGTTATATGCCTCCTCAACATGCACAAGTAGGAGCTGCCGGTGTCATGATGAGTAATAAGCCTGTGATGGACCCTTATGCTCAACAGTCTCATCAATATAACATGGCACAACAAATGTGGCCACAACCACCAGAACAACAACAATCATCATCAGACCAGTAG 786 0.444 MDHQGHGHGQNPSLGVVGSGTQLTYGSNPYQGSHITGSPGMVVASPGTIQSTGQATTTQLGQHQLAYQHMHQQQQQQMQQRLQVFWTNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRKTLQKNDIAAAITRTDIFDFLVDIVPREDYKDEVLASMPRGTVPVTAPPEALPYCYMPPQHAQVGAAGVMMSNKPVMDPYAQQSHQYNMAQQMWPQPPEQQQSSSDQ 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02111 261 Gene3D Histone, subunit A 64 181 IPR009072 GO:0046982
Vimu3g02111 261 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 70 236 - -
Vimu3g02111 261 FunFam Nuclear transcription factor Y subunit gamma 68 181 - -
Vimu3g02111 261 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 103 166 IPR003958 -
Vimu3g02111 261 MobiDBLite consensus disorder prediction 1 22 - -
Vimu3g02111 261 SUPERFAMILY Histone-fold 65 175 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02111 Vimu-Chr3 35990708 35991493 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02111 18 255 CCAAT-HAP5 Transcription Factor Family AT1G54830 61.088 1.95e-83 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vimu3g02111 CBFD_NFYB_HMF 1.8e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02111 K08066 - gmx:100785287 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02111 3 35990708 35991493 Vimu3g02111 3 35990708 35991493 ECH