Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02088 ATGGATCAGGAGGAGCAAGATAAAGCTTTGCCCATTGCAAATGTGGGTAGAATCATGAAGCAAAATCTTCCTCCAAGTGCAAAGATCTCAAAGGAAGGGAAACAACTAATGCAAGAGTGTGTTACAGAGTTCATAAGTTTTGTGACTGGTGAGGCATCTGACAAGTGTCACAAGGAGAATCGCAAGACCGTTAATGGGGATGACATCTGTTGGGCTCTAAGTTCCTTAGGGTTTGACAACTATGCTGAGGCCATAGCAAGGTACTTGCATAAATACAGGCAAGCAGAAAGGGAGAAAATCAAAAACAACGACAAAAAATATGAAGGATCAGCAACAAAATCTCTCAACCAAACTCAACTCATCCTTGCTCCACCACCATCACTCTCTAGGGTTACTCATGACAAGCTTCAAAACCCTCCCACCACAGATCAATCCTAG 438 0.4292 MDQEEQDKALPIANVGRIMKQNLPPSAKISKEGKQLMQECVTEFISFVTGEASDKCHKENRKTVNGDDICWALSSLGFDNYAEAIARYLHKYRQAEREKIKNNDKKYEGSATKSLNQTQLILAPPPSLSRVTHDKLQNPPTTDQS 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02088 145 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 10 73 IPR003958 -
Vimu3g02088 145 MobiDBLite consensus disorder prediction 100 145 - -
Vimu3g02088 145 MobiDBLite consensus disorder prediction 109 145 - -
Vimu3g02088 145 Gene3D Histone, subunit A 1 123 IPR009072 GO:0046982
Vimu3g02088 145 Coils Coil 78 98 - -
Vimu3g02088 145 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 3 109 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vimu3g02088 145 ProSitePatterns NF-YB/HAP3 subunit signature. 40 56 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vimu3g02088 145 PRINTS CCAAT-binding transcription factor subunit A signature 37 55 - -
Vimu3g02088 145 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Vimu3g02088 145 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Vimu3g02088 145 SUPERFAMILY Histone-fold 6 109 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02088 Vimu-Chr3 35776242 35777343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02088 5 103 CCAAT-HAP3 Transcription Factor Family AT1G09030 72.727 1.79e-53 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vimu3g02088 CBFD_NFYB_HMF 4.7e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02088 K08065 - gmx:100815151 221.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02088 3 35776242 35777343 Vimu3g02088 3 35776242 35777343 ECH