Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02085 ATGTCAAACATCACTAGTTGTGATAGTGGGAGCTTCTCTACAGAAAATACCAGAGAAGATGCAGCAGTTAAGCAGCAACCTGAGATCCTCGCTCAGTTCCATAGTCCACATTCTCTTACTTCAACCACAACAACAACAAATAACAGCAATGCTTCCAACACAATTTCACAACCACCTGCACCTGTTAAGAAGAAAAGGAGCCTACCAGGAAATCCAGATCCAAGTGCTGAAGTAATAGCTTTATCACCAAACACACTAATGGCTACAAACCGGTTCATATGTGAAATCTGCAACAAAGGGTTTCAAAGAGATCAAAACCTTCAGTTGCACCGGCGAGGCCACAACTTGCCATGGAAGCTTAAGCAGAGAACAAGCACAGAGGTTCGAAAGAGGGTTTATGTTTGTCCAGAACCTTCGTGTGTCCACCACAACCCTGCAAGAGCTCTCGGTGATCTCACCGGCATTAAAAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGTGATAAGTGCTCAAAGAAATACGCTGTTCAGTCTGACTGGAAAGCCCACTCAAAAATCTGTGGTACAAGGGAATACAAATGTGACTGTGGTACCATTTTTTCAAGAAGAGACAGTTTCATTACACACAGAGCTTTCTGTGACGCACTAGCTGAAGAGAACAACAAAGCCAACGAAGGACAATTACCAAAGATAGGTACAAACTTGCAATGTCAACAGATTCCGAACCTTGTTTCCTCGTTACCAATCAACACCAACGTTGTTCCCAACCCACAACAAATCGGTGGAACCTCGGAGTTCAACCATGCTGAACACAAGCACCCACTGTCACTCCCACACGAGCTAATGCCAATGCCTGCACCAAAACCCTTCAACTCCAACACCACCATGGCAGGAACAGTGTTCTCCAGAAGCCTCTCATCAACCTCTTCACCGTCTCTCCAACTAAGTTCAAACATATTCGAGGAAAACGGGCTCCACCTGGCTGCAGGGTCGCAACACATGTCAGCCACCGCACTGCTTCAAAAAGCTGCGCAAATGGGAGCAACAGTGACGGATAAAACTTTTACCACAAACATGGCACCGCCGTCGTTTGGGGTGCTGCAGCAGCAGCAGCAGCCGAATGGACAATCCTTCATGAGCCAGTACATGCACAGTGGCCAACAGGATCCCAACGTTAGCATCTCCGCTCAGTATAACGGTTTCGGCGCAAATGGGATGAGTGGAGGGAGCGTTGGAATGAACGGCGTGGACATGTTCAACGCTATCTTGGACCAAAGCAAGGCTTTATCAAAGATCATAGAGCAAAGCAACAGAAGCAGTAGTGGAGGTGCAACAAATGGAGGTTCAAGTGGTGCTGGTGGAAGTAAAGGAAGTGAGGATGTGATGACTTTGGACTTTTTGGGAATAGGAGGTGGCGGTGGCGGCGGAGGCGGCGGCGGCGGTGCGCATGGAAACTTTTATGGTGGTGCTCAGCAAGCAGAAAACGGTGCAGCGGATGAGGTTTGGAGAAACTGGTCAAGTAAGAACGCAGGGTTTGAATCATTTTCAGCAACAAGTAGCATTTGA 1575 0.4762 MSNITSCDSGSFSTENTREDAAVKQQPEILAQFHSPHSLTSTTTTTNNSNASNTISQPPAPVKKKRSLPGNPDPSAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEGQLPKIGTNLQCQQIPNLVSSLPINTNVVPNPQQIGGTSEFNHAEHKHPLSLPHELMPMPAPKPFNSNTTMAGTVFSRSLSSTSSPSLQLSSNIFEENGLHLAAGSQHMSATALLQKAAQMGATVTDKTFTTNMAPPSFGVLQQQQQPNGQSFMSQYMHSGQQDPNVSISAQYNGFGANGMSGGSVGMNGVDMFNAILDQSKALSKIIEQSNRSSSGGATNGGSSGAGGSKGSEDVMTLDFLGIGGGGGGGGGGGGAHGNFYGGAQQAENGAADEVWRNWSSKNAGFESFSATSSI 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02085 524 Gene3D Classic Zinc Finger 147 226 - -
Vimu3g02085 524 MobiDBLite consensus disorder prediction 1 20 - -
Vimu3g02085 524 Gene3D Classic Zinc Finger 71 138 - -
Vimu3g02085 524 MobiDBLite consensus disorder prediction 31 60 - -
Vimu3g02085 524 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 114 IPR013087 -
Vimu3g02085 524 FunFam protein indeterminate-domain 5, chloroplastic-like 146 225 - -
Vimu3g02085 524 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Vimu3g02085 524 SUPERFAMILY beta-beta-alpha zinc fingers 91 188 IPR036236 -
Vimu3g02085 524 FunFam protein indeterminate-domain 12-like 71 139 - -
Vimu3g02085 524 SMART c2h2final6 168 188 IPR013087 -
Vimu3g02085 524 SMART c2h2final6 133 163 IPR013087 -
Vimu3g02085 524 SMART c2h2final6 92 114 IPR013087 -
Vimu3g02085 524 MobiDBLite consensus disorder prediction 1 75 - -
Vimu3g02085 524 MobiDBLite consensus disorder prediction 437 456 - -
Vimu3g02085 524 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 45 492 IPR031140 -
Vimu3g02085 524 MobiDBLite consensus disorder prediction 437 460 - -
Vimu3g02085 524 Pfam Zinc-finger double-stranded RNA-binding 92 114 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02085 Vimu-Chr3 35724885 35728284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02085 40 351 IDZ Gene Family AT3G50700 55.457 1.80e-117 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu3g02085 zf-C2H2_jaz 7.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02085 - - gmx:100785295 843.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01831 2 13261172 13263911 Vimu3g02085 3 35724885 35728284 ECH
Vimu3g02085 3 35724885 35728284 Vimu3g02085 3 35724885 35728284 ECH
Vimu6g02779 6 24389082 24392349 Vimu3g02085 3 35724885 35728284 PCT
Vimu2g01831 2 13261172 13263911 Vimu3g02085 3 35724885 35728284 PCT