Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu3g02081 | ATGGCGGAAACCAAGTTGAAAGAAACTGTTCACCAAGAAGAAGAAAAAGAAGAAGCAGATAACCAAAGCTTCGAAGAACTCGGCGTGGACGCTCGTCTCCTTCGCGCCTTACAAAAGAAAGAGATAGAGAAACCCACTCCAATTCAGGCCGTCGCGATTCCACTCATTCTGGAAGGTAAGGACGTGGTTGCACGCGCCAAAACAGGTTCCGGAAAGACCTTAGCATATCTTCTCCCGTTGCTACAGAAACTGTTTATCGTTAGTGCTGATCGGAAGAAGCTAGCGCCCAATGCTTTTGTTCTTGTCCCTACTCGCGAATTGTGTCAACAGGTGTATGCGGAAGTGTTATTGCTGGTTGAGTTATGCAGAGTTCAACTGAAAGTTGTGCAGCTGAATAGCAACATGCTTCCTAATGACTTGCGGGCAGCATTGGCCGGACCTCCTGATATTTTGATCTCCACTCCTGCTTGCGTAGCGAAGTGTTTGTCCGGTGGCATACTTAAGGCGGCATCCATTAACGAATCCCTTGAAACTCTTGTTCTTGATGAGGCCGATCTTCTTCTATCGTATGGGTATGAAAATGATATAAAAGCTTTTACACCTCATGTTCCCAGAAGTTGCCAGTGTCTTCTTATGTCTGCAACATCAAGTGCGGATGTTGACAAACTAAAGAAGTTGATTCTGCACAACCCATTTATTTTGACTTTGCCTGAAGTGGGAAATAATAAGGATGAGATCATTCCTAAAAATGTTCAGCAGTTTTGGTTTGGGATCAGATCTGCTGTTTTAAATCCTGAGTTGCCTCAGAATTCCCGTCTCCATATTCTGGAGGAATTCAATGCGGGCCTATTTGATTATCTAATTGCAACAGATCTTAGTCAGTCAAAGGAAAAGGATGAAGTGTCTAAGGAAAGTAATGTCGTATCACGGAAGTCTAGAAAACGTGCTAAAGTAAAATTAGATTCTGAATTTGGAGTTGTAAGGGGAGTTGACTTTAAAAATGTATTCACGGTTATAAACTTTGAAATGCCTCAAAATGTTGAGGGATATGTTCATCGAATTGGACGAACAGGAAGAGCATACAATTCTGGTACTTCTGTTTCTCTGGTTTCTCCCGATGAAATGGCTACTTTAGAAGAAATAAGATCTTTCGTTGGAGATGACGAAAACAAAGGCACAAGTTCTATTGCCGTGTTTCCCCTTCTCACCAAGAATGCAGTTGAATCTCTACGGCATGCATTGGTGAGTGATTTGCTTGTGTTGTGGGTAACAGCTAAAATGTATCCATACATGCTTAAACTTGAGTGTATGGACCTGCATGTTGCGCATACTCTCGACGTTGCCAAGAGTGTAACCAGAATTGCAGTCCGAGAATCACGAGCCCAGGATTTGAGGAATGAAATTTTGAACTCTGAAAAGTTGAAAGCCCATTTTGAGACTAATCCAAGAGACCTAGATCTACTGAAGCACGACAAAGTTTTGAGCAAGAATGCTCCACCTCCGCACCTGCGCGATGTGCCTGACTACCTATTAGACAAACAAACGAAAGAGGCAAGGGAAATGGTCAAACTTGCGAGGGATGCAATGGGAAATAATAATCGCCGCAAAGGATCAAAGAGAAAATTAAGAAAAGATGGAGACCCTCTGAAGGCTATCTCCGCTCTGGCATCAAAAAGACCGCGCAAAGTTAGGAAGACTGGTGGAAGCGATGGCAACAATAGCAGTGATAGACATAAACGCAAAAACAACAAGGGTTTATGA | 1761 | 0.4293 | MAETKLKETVHQEEEKEEADNQSFEELGVDARLLRALQKKEIEKPTPIQAVAIPLILEGKDVVARAKTGSGKTLAYLLPLLQKLFIVSADRKKLAPNAFVLVPTRELCQQVYAEVLLLVELCRVQLKVVQLNSNMLPNDLRAALAGPPDILISTPACVAKCLSGGILKAASINESLETLVLDEADLLLSYGYENDIKAFTPHVPRSCQCLLMSATSSADVDKLKKLILHNPFILTLPEVGNNKDEIIPKNVQQFWFGIRSAVLNPELPQNSRLHILEEFNAGLFDYLIATDLSQSKEKDEVSKESNVVSRKSRKRAKVKLDSEFGVVRGVDFKNVFTVINFEMPQNVEGYVHRIGRTGRAYNSGTSVSLVSPDEMATLEEIRSFVGDDENKGTSSIAVFPLLTKNAVESLRHALVSDLLVLWVTAKMYPYMLKLECMDLHVAHTLDVAKSVTRIAVRESRAQDLRNEILNSEKLKAHFETNPRDLDLLKHDKVLSKNAPPPHLRDVPDYLLDKQTKEAREMVKLARDAMGNNNRRKGSKRKLRKDGDPLKAISALASKRPRKVRKTGGSDGNNSSDRHKRKNNKGL | 586 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu3g02081 | 586 | Gene3D | - | 251 | 409 | IPR027417 | - | |
| Vimu3g02081 | 586 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Vimu3g02081 | 586 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 215 | 407 | IPR001650 | - | |
| Vimu3g02081 | 586 | MobiDBLite | consensus disorder prediction | 526 | 586 | - | - | |
| Vimu3g02081 | 586 | Pfam | DEAD/DEAH box helicase | 46 | 223 | IPR011545 | GO:0003676|GO:0005524 | |
| Vimu3g02081 | 586 | SMART | ultradead3 | 41 | 254 | IPR014001 | - | |
| Vimu3g02081 | 586 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 22 | 50 | IPR014014 | GO:0003724 | |
| Vimu3g02081 | 586 | Gene3D | - | 1 | 236 | IPR027417 | - | |
| Vimu3g02081 | 586 | Coils | Coil | 461 | 481 | - | - | |
| Vimu3g02081 | 586 | MobiDBLite | consensus disorder prediction | 563 | 580 | - | - | |
| Vimu3g02081 | 586 | CDD | SF2_C_DEAD | 256 | 370 | - | - | |
| Vimu3g02081 | 586 | CDD | DEADc_DDX56 | 29 | 236 | - | - | |
| Vimu3g02081 | 586 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 58 | 382 | IPR027417 | - | |
| Vimu3g02081 | 586 | SMART | helicmild6 | 245 | 361 | IPR001650 | - | |
| Vimu3g02081 | 586 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 9 | 235 | IPR027417 | - | |
| Vimu3g02081 | 586 | Pfam | Helicase conserved C-terminal domain | 252 | 361 | IPR001650 | - | |
| Vimu3g02081 | 586 | PANTHER | RNA HELICASE | 256 | 461 | - | - | |
| Vimu3g02081 | 586 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 53 | 234 | IPR014001 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu3g02081 | Vimu-Chr3 | 35692580 | 35699879 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu3g02081 | 3 | 401 | Eukaryotic Initiation Factors Gene Family | AT3G13920 | 26.014 | 1.90e-31 | 125 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu3g02081 | K14810 | - | gmx:100800749 | 898.271 |