Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02078 ATGGGAAGGAATGCGATGGATGGGAACGACACATGTTGTGACAAAGTCATTGCAGAAATGATTGAAATGGGTTTCGAGCATTCGAGCATAGTCGAAGCCATTAAAGTAGTGGGTCCATCTGTTCCCAGCGCTGTGGAACACATTCTCAATTCTACTACTGAAGAACCATCCACTACCCACACCTCCAATTCGCATGCCCGCAATGGGAATGCTCTCAAAAAACGACCTTTGCGCAAGTGTTTAGTTCGACAATCCAATATATTTGACCATTTCCGTTCCAATGACGATGTCGAAGAACAAAAGAAGGAAATCCCTCAATTGGGGATTAAACCCAACCCCATTGTGCTTTCAGAGCCTTTTGAAGCGCAAGATTTGGATGTTGAATCTGATTGGGAGCAGAAGACTAGTAATCTGATGAAAAAGCATTTTGGTTTTTCATCCTTGAAGAGTTTTCAGAAGGAAGCCATCTCTGCCTGGGTTGCTCACAAAGACTGTCTTGTCCTCGCTGCAACAGGATCCGGGAAGTCTCTGTGCTTTCAGATTCCTGCATTGTTGTCTGGGAAAGTGGTGGTTGTGATTTCGCCCTTGATAAGCCTCATGCATGACCAGTGTTTAAAGCTGACTAGACATGGGATCAGTGCGTGCTTTCTTGGCTCCGGGCAACCAGATAATACCGTTGAACAGAAAGCAATGAGAGGATTGTATAGTATAGTGTATATTTGCCCAGAGACTGTTCTAAGATTGATTCAACCACTGCAGAAGCTTGCAGAAAGTCGTGGTATTGCTTTATTTGCAATTGACGAGGTACACTGTGTTTCGAAATGGGGTCATGATTTTCGTCCAGATTACAGGCGACTGTCTGTGCTGAGAGAAAATTTCAGTACAAGCAAGCTAAAATCCCTAAAATTTGATATACCTCTGATGGCCTTAACAGCTACAGCTACAAAAAGAGTACGAGAAGACATTTTAAAATCATTGCAAATGTCAAAAGAAACGAAAGTTTGCCTTACATCATTTTTTAGACCTAACTTACGATTCATGGTAAAACATAGTCGAGTATCACAGGCTTCTTATGCAAAAGATTTTCATGAATTGATTCGTGTATATGGTAGAAAGAAAAATATTGATGAAAAGGAAAAGGTTTTCATCTCAGATGATTCAGATCAGATTTCTAATAGCTCCGATGCTAGTAGTATATCTGATACAGACAGTGTTTCACCTGATGACATGGATGACAACCAAGATGATTATGCTTATAGAGATATTAATATAATGCACTCAGGAAACTCTGATGACTTTTTAACTGGAAAAGAATTGTCAATTGAATTCCTGGAAAATGATATTGATGCCTTTCAAAGTATGGATGTTGCCCGTGGTGACTTCTGTGTGCTACCTCACAAGGAATTGGAATTATCCAAGAACACCAACATACCTAAGAAACCAGAAGGAAGAGTAAAAATTCTTAACCAGCCTTTGGAACAAGGACCAACAATCATATATGTACCCACCAGAAAAGAAACTCTGAGAATTGCGAAGTACCTATGCAAGTTTGGTTTGAAGGCAGCTGCTTATAATGCAGGGCTTCCGAAATTGCATCTAAGAAAGGTTCATAAAGAGTTTCACGAAAATAGTTTAGAGGTTATTGTTGCTACAATAGCTTTTGGAATGGGTATTGACAAATCAAATGTCAGAAGAATCATCCACTACGGTTGGCCACAGAGTTTAGAAGCATACTATCAAGAAGCTGGACGGGCTGGTCGAGATGGGAAATTATCAGATTGCATTCTGTATGCAAACCTAGCAAGCAAGCCATCACTTTTGCCTAGTCGAAAAAGTGAAGATCAGAAAAAACAAGCATATATTATGTTGTCTGATTGTTTCAGATATGGAATGAATACTTCATGCTGTCGAGCTAAGATTCTCGTTGAATACTTTGGAGAGGATTTCGGTCATCAGAAATGTCACTTATGTGATGTGTGCATTGATGGTCCACCTAAAAAGCAGAATCTAAAAGAGGAGGCCTGTATTTTTCTGCAAACTATAGGTGCCCAAAATGGGCGTAGGGATTCCAAGGATTACTCATATGACGATGATATACATTTTGACTACAATTACAGAGGACAAAGAGAGAGGCCAAATCTTAGGATGTTGGTTGGAAAAATAAGGCAGCAGTTTCAAAAGTTTTCAACCACTGACATGTTATGGTGGAGAGGTCTTGCTCGAATTTTGGAAGTTAAAGGATACATCAGAGAAGGAGATGACAAGAGTCATGTTCAGGCAAAATTCCCGGAATTTGTGAGGTCCATGAATGAGGAAGCTTTCTGGGTTTACCCTGAAGCAGATATGTTGCTTGCAAGAAAATTAACTGAGAAACCATTTTCATCATTCTCAGAATGGGGAAAGGGTTGGGCTGATCCTGAGATCCGTCGCCAGCGCCTAGAAAGAATGGGAGTGAAGAGAAAGTCAGGGATGGTGTCAAGTTCCAAAGGGAAACGAAAGAGAAAAGTGCAACATGATTTGAGGACTTCTCGTGGCAGACTAACAGCAAAACTCTCAAAATATAAGTGA 2568 0.4042 MGRNAMDGNDTCCDKVIAEMIEMGFEHSSIVEAIKVVGPSVPSAVEHILNSTTEEPSTTHTSNSHARNGNALKKRPLRKCLVRQSNIFDHFRSNDDVEEQKKEIPQLGIKPNPIVLSEPFEAQDLDVESDWEQKTSNLMKKHFGFSSLKSFQKEAISAWVAHKDCLVLAATGSGKSLCFQIPALLSGKVVVVISPLISLMHDQCLKLTRHGISACFLGSGQPDNTVEQKAMRGLYSIVYICPETVLRLIQPLQKLAESRGIALFAIDEVHCVSKWGHDFRPDYRRLSVLRENFSTSKLKSLKFDIPLMALTATATKRVREDILKSLQMSKETKVCLTSFFRPNLRFMVKHSRVSQASYAKDFHELIRVYGRKKNIDEKEKVFISDDSDQISNSSDASSISDTDSVSPDDMDDNQDDYAYRDINIMHSGNSDDFLTGKELSIEFLENDIDAFQSMDVARGDFCVLPHKELELSKNTNIPKKPEGRVKILNQPLEQGPTIIYVPTRKETLRIAKYLCKFGLKAAAYNAGLPKLHLRKVHKEFHENSLEVIVATIAFGMGIDKSNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLSDCILYANLASKPSLLPSRKSEDQKKQAYIMLSDCFRYGMNTSCCRAKILVEYFGEDFGHQKCHLCDVCIDGPPKKQNLKEEACIFLQTIGAQNGRRDSKDYSYDDDIHFDYNYRGQRERPNLRMLVGKIRQQFQKFSTTDMLWWRGLARILEVKGYIREGDDKSHVQAKFPEFVRSMNEEAFWVYPEADMLLARKLTEKPFSSFSEWGKGWADPEIRRQRLERMGVKRKSGMVSSSKGKRKRKVQHDLRTSRGRLTAKLSKYK 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02078 855 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 51 IPR015940 -
Vimu3g02078 855 Pfam RecQ zinc-binding 610 660 IPR032284 -
Vimu3g02078 855 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 207 IPR027417 -
Vimu3g02078 855 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 332 IPR014001 -
Vimu3g02078 855 Gene3D - 601 776 IPR036388 -
Vimu3g02078 855 Coils Coil 855 855 - -
Vimu3g02078 855 MobiDBLite consensus disorder prediction 386 413 - -
Vimu3g02078 855 MobiDBLite consensus disorder prediction 825 840 - -
Vimu3g02078 855 Pfam DEAD/DEAH box helicase 151 318 IPR011545 GO:0003676|GO:0005524
Vimu3g02078 855 CDD DEXHc_RecQ 139 339 - -
Vimu3g02078 855 SMART helicmild6 508 589 IPR001650 -
Vimu3g02078 855 PANTHER DNA HELICASE RECQ FAMILY MEMBER 126 749 - -
Vimu3g02078 855 FunFam ATP-dependent DNA helicase 117 340 - -
Vimu3g02078 855 FunFam ATP-dependent DNA helicase 469 598 - -
Vimu3g02078 855 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 484 642 IPR001650 -
Vimu3g02078 855 MobiDBLite consensus disorder prediction 386 404 - -
Vimu3g02078 855 Gene3D - 467 598 IPR027417 -
Vimu3g02078 855 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 600 IPR027417 -
Vimu3g02078 855 Pfam Helicase conserved C-terminal domain 486 588 IPR001650 -
Vimu3g02078 855 NCBIfam RecQ family ATP-dependent DNA helicase 138 367 IPR004589 GO:0004386|GO:0006310
Vimu3g02078 855 SUPERFAMILY UBA-like 13 56 IPR009060 GO:0005515
Vimu3g02078 855 Gene3D - 117 340 IPR027417 -
Vimu3g02078 855 SMART ultradead3 144 349 IPR014001 -
Vimu3g02078 855 MobiDBLite consensus disorder prediction 815 855 - -
Vimu3g02078 855 FunFam ATP-dependent DNA helicase 600 773 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02078 Vimu-Chr3 35666053 35677151 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02078 492 607 Eukaryotic Initiation Factors Gene Family AT5G11170 27.586 1.28e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02078 K10900 - gmx:100793222 1300.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02078 3 35666053 35677151 Vimu3g02078 3 35666053 35677151 ECH