Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02077 ATGGCTTCTGCTTCTGACCATTTTTCTATCTTCTTCATCATCACCCTTTTCGTCCTCCTGTCATCACACATTTTTACTGTGGCGGATTCTCTGTTCAATGCAGTCGCAAGCTTCCAACTTCATGCCCTACCAGATATGCATTTCATTGAAGGGAATGATCAAAACCAGATTAAGAAAATCTCAGGACTCGATGAGAATGAAAAGAAGCAAGCTTTCATAGTGGACAAGTTTAGATCCTTGCTTGGACTAAAGACTTTCCACACCAAAGTACCACCCAATGGTGATTTCGACTTTCTCTCTCCCTCACCTTCTCCGTCTCCCCTCATTGAAGAAGCTCAGGCTTCAGCCCCTTCTCCACTTCCACACGTGCACTCTCATTCCCATCATCCACGCCACCGCACGAATCCACCGCTTCACCAAACTCATCACGAAGATAGAGGCAGGGCCAAAATAATACTAATAGCTGTTCTTGTATCTGCTGGTGTTGCTACATTGATTGGTGCCTGTGGATTATTCTTGTTGTGGAGGAAATTCTCAAGTCACAAAAAGAAACCCAAAAGGACAATGCCACTCTGTAGCAAGAGCAAGGGAAGTGGAGGTTCTTATCAAAGTTCATCGAGCAAGGTGAGTTTAAACTCTGGACTAGATCTGTTTTATCTTAATGCTTTAGGCGATGACGTTGAGCAACACGGTTGCACCTTGAAAAAAACTTACAAGGATGGCGTAGAGTATGATAATGTTAGCGGTTCTTCCACCAAGGAAATTGCATCTGTTCATGAAGATGCAGACTCAGAAAAGGGTGAAGCTGAATCTGATGGCGACAACTCTTCTGGGGATAAGATTATCCCTGAAGATTGTCATTCTTCAGACGATGAAAGCTTCCATTCCTTCGTTGATTCTCATTCCAATAATAGACTTTCCAATGCTTCGGCTTGTAATCTTAGTGACAGAAACTCTCTGTCACGTCAAAATTCAAGTTCATTACCGAACCAATTTCTTAGCTCTCCACCACACAACTCGATCCCAAATACACAATCTCACCAACCATCAAGTAGTACAAAACATGAGGAGCAAGAGACTGAGACCACTCACCAATGTTTAAAAACATTTACTCCACCACCACCACCACCACCTCCTCCTCCTCCTCCTCCTCCTCCACCATTGCAAATGCCATTGTTTTCTTTGCATTCTCTCACTTCTTCCTCTAGAGTCTCTTCTCATTCCCCACTTTCTTTGACATCTAACAATTTATCATCTCCGGTAAATTCAGACACTTTCTCAGGTTCAAATCAAAGTCCGGAAAAGGAGTTGCCTTCCACACCTGAACCTTACCCTACACATTCTCCTCCCAACATCCCCCCACCACCATGCCCACCTCCATTTCTCAAAGGCAATAGTAACAATACTAAAACCCCACCTCCTCCACCATCTCAACTACCCCAATTCACCCCACTTGGTAAAGATGGTGCACCATTGCCAAAACTAAAACCACTTCACTGGGACAAAGTAAGAGCGGCACCAAATCGCACAATGGTTTGGGATAAACTGCGATCGAGCTCATTCGAGTTGGATGAGGAAATGATCGAGTCTCTTTTTGGTTACAACTTGCAAAATTCAATTAAGAACGACGAAACAAAGAGTAAAACCCCGTCACCAGGCAAGCACAACATAACTATACTCTCAAAAGCTCTGAATGCGACAGCAGAGCATGTCTGCGAGGCCTTAATGCAAGGTAAAGTTAACTCCTCAATTATGAAATATGCCGAAGAAAAAGGGAAGGGGCTGTCTTTACCCCAACTAGAGGCACTAGTGAAGATGGTACCCACCAAGGAAGAAGAATCCAAGCTCTTCAATTATAAAGGTGACATCAATGAATTGGGGTCCGCCGAAAGGTTCGTGAGAGCAATGCTTGATGTGCCGTATGCCTTTCAAAGAGTAGAAGGCATGCTTTTCAGAGAGACGTTTGACGATGAAGTAGTTCACCTCAGGAACTCATTTTCAATGCTTGAGGAAGCATGCAAGGAACTTCGATCAAGCAGGTTATTCTTGAAGCTACTAGAAGCAGTGCTCAAAACAGGAAACCGTATGAACGTTGGAACAATCAGAGGAGGTGCTAGAGCATTTAAACTAGATGCCCTTCTCAAGCTTGCAGATGTTAAGGGAACTGATGGGAAAACCACGTTGCTCCATTTTGTTGTTCAGGAGATTGTTCGTTCCGAAGGAATAAGAGTTTCAGATAGCATTATGGGAAAAATCAGCCAGAGAAGTAAGAACAGAACGGAGGAAGAGAAGGAAGAAGATTACAAAAGAATGGGATTAGAACTTGTTTCTGGTCTCAGCACTGAGTTATACAACGTGAAGAAAACAGCCACAATAGACTTGGATGTTCTTGCAAGCTCTGTGTCGAATCTATCAGAAGGTATGAAAAAGCTGCAACATATAGTGGAAAAGGAACTGCATAAAGATGAGAGAAGCATTAACTTTGTACAGTGTATGAAGTCATTTCTGAACTATGCTGATGCAAACTTGAAAGAGTTACGAGGAGATGAAAATAAAGTATTGGTACGTGTGAAAGAAATCACGGAATATTTTCATGGGGATGTGAGCAAAGAAGATGCAAATCCTTTGAGGATATTTGTGATTGTTAGAGATTTTCTGGGGATGTTAGATAATGTGTGTAAAGAACTTAGAAAGTCTAAAGCTCCACGTAGTCCAAATCCTCTTGCAATGCTCCCTTTAGATAGATCATAG 2751 0.4264 MASASDHFSIFFIITLFVLLSSHIFTVADSLFNAVASFQLHALPDMHFIEGNDQNQIKKISGLDENEKKQAFIVDKFRSLLGLKTFHTKVPPNGDFDFLSPSPSPSPLIEEAQASAPSPLPHVHSHSHHPRHRTNPPLHQTHHEDRGRAKIILIAVLVSAGVATLIGACGLFLLWRKFSSHKKKPKRTMPLCSKSKGSGGSYQSSSSKVSLNSGLDLFYLNALGDDVEQHGCTLKKTYKDGVEYDNVSGSSTKEIASVHEDADSEKGEAESDGDNSSGDKIIPEDCHSSDDESFHSFVDSHSNNRLSNASACNLSDRNSLSRQNSSSLPNQFLSSPPHNSIPNTQSHQPSSSTKHEEQETETTHQCLKTFTPPPPPPPPPPPPPPPPLQMPLFSLHSLTSSSRVSSHSPLSLTSNNLSSPVNSDTFSGSNQSPEKELPSTPEPYPTHSPPNIPPPPCPPPFLKGNSNNTKTPPPPPSQLPQFTPLGKDGAPLPKLKPLHWDKVRAAPNRTMVWDKLRSSSFELDEEMIESLFGYNLQNSIKNDETKSKTPSPGKHNITILSKALNATAEHVCEALMQGKVNSSIMKYAEEKGKGLSLPQLEALVKMVPTKEEESKLFNYKGDINELGSAERFVRAMLDVPYAFQRVEGMLFRETFDDEVVHLRNSFSMLEEACKELRSSRLFLKLLEAVLKTGNRMNVGTIRGGARAFKLDALLKLADVKGTDGKTTLLHFVVQEIVRSEGIRVSDSIMGKISQRSKNRTEEEKEEDYKRMGLELVSGLSTELYNVKKTATIDLDVLASSVSNLSEGMKKLQHIVEKELHKDERSINFVQCMKSFLNYADANLKELRGDENKVLVRVKEITEYFHGDVSKEDANPLRIFVIVRDFLGMLDNVCKELRKSKAPRSPNPLAMLPLDRS 916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02077 916 MobiDBLite consensus disorder prediction 107 144 - -
Vimu3g02077 916 MobiDBLite consensus disorder prediction 256 298 - -
Vimu3g02077 916 SMART it6_source 485 904 IPR015425 -
Vimu3g02077 916 SUPERFAMILY Formin homology 2 domain (FH2 domain) 498 900 - -
Vimu3g02077 916 MobiDBLite consensus disorder prediction 369 391 - -
Vimu3g02077 916 MobiDBLite consensus disorder prediction 185 206 - -
Vimu3g02077 916 MobiDBLite consensus disorder prediction 314 351 - -
Vimu3g02077 916 MobiDBLite consensus disorder prediction 393 437 - -
Vimu3g02077 916 Gene3D Formin, FH2 domain 508 905 IPR042201 -
Vimu3g02077 916 MobiDBLite consensus disorder prediction 438 462 - -
Vimu3g02077 916 MobiDBLite consensus disorder prediction 250 302 - -
Vimu3g02077 916 ProSiteProfiles Formin homology-2 (FH2) domain profile. 485 915 IPR015425 -
Vimu3g02077 916 PANTHER FORMIN-RELATED 404 901 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Vimu3g02077 916 MobiDBLite consensus disorder prediction 314 495 - -
Vimu3g02077 916 Pfam Formin Homology 2 Domain 489 889 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02077 Vimu-Chr3 35659691 35663494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02077 470 909 FH2 protein (formin) Gene Family AT3G05470 71.175 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02077 - - gmx:100793761 1275.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02077 3 35659691 35663494 Vimu3g02077 3 35659691 35663494 ECH
Vimu2g01841 2 13310106 13312784 Vimu3g02077 3 35659691 35663494 PCT