Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02066 AAAGTGAAAAGAATGAGTCGAGGAGGGGTAACTGCTTCGAAGGGCAAGAAGAAGGGGGCGACATTCACCATTGACTGTGCGAAGCCAGTGGAGGACAAGATCATGGATATTGCGTCTCTCGAGAAGTTCCTTCAAGAGAGGATTAAGGTTGCTGGCAAGGCCGGTGCTCTCGGTGACACCGTCGCCGTCGCACGCGAGAAGACCAAAATCATTGTTACCTCCGACAGCAACTTCTCTAAACGGTACCTCAAGTACTTGACTAAGAAGTATTTGAAGAAGCACAACGTTCGTGACTGGCTCAGAGTGATTGCTTCTAACAAAGATAGAAGCGTTTATGAACTGAGGTACTTCAACATTGCTGAGAATGAAGGAGAGGAAGAAGATTAG 387 0.4729 KVKRMSRGGVTASKGKKKGATFTIDCAKPVEDKIMDIASLEKFLQERIKVAGKAGALGDTVAVAREKTKIIVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02066 128 PANTHER 60S RIBOSOMAL PROTEIN L22 3 128 IPR002671 GO:0003735|GO:0005840|GO:0006412
Vimu3g02066 128 FunFam 60S ribosomal protein L22-2 9 128 - -
Vimu3g02066 128 Gene3D - 10 128 IPR038526 -
Vimu3g02066 128 Pfam Ribosomal L22e protein family 18 126 IPR002671 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02066 Vimu-Chr3 35564344 35564929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02066 5 128 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 82.258 1.34e-64 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02066 K02891 - gmx:100499952 221.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02066 3 35564344 35564929 Vimu3g02066 3 35564344 35564929 ECH
Vimu2g01856 2 13421940 13422810 Vimu3g02066 3 35564344 35564929 ECH
Vimu3g02066 3 35564344 35564929 Vimu2g01856 2 13421940 13422810 ECH
Vimu3g02066 3 35564344 35564929 Vimu3g01777 3 32245426 32245737 ECH
Vimu2g01856 2 13421940 13422810 Vimu3g02066 3 35564344 35564929 PCT