Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02064 TTGGACACACAGGGGATCGATCTGAAGGCCGGAGGTAAGAGCAAAAAGACGAAAAGAACAGCACCAAAGTCCAATGATATCTATCTCAAGCTCTTGGTTAAGCTTTATCGCTTCCTTGACCGGAGAACTGGCAGCAATTTCAATGCTGTTATACTCAAGCGATTGTTCATGAGCAAGGTTAACAAGCCCCCACTTTCTTTGTCAAGGTTGATTAAGTATACCAAGGGAAAGGAAGATAGGATTGCTGTTGTGGTGGGGACTGTAACTGATGATATCCGTGTTTATGAAGTTCCACCCTTGAAAGTTACAGCACTCAGGTTTACAGAGACTGCTCGTGCAAGAATTGAGAAGGCTGGCGGTGAATGTTTGACATTTGATCAGTTGGCTCTTAGGGCACCTCTTGGAGAGAACACGGTCCTTCTTAGAGGCCCAAAGAATGCTCGTGAAGCTGTGAAGCACTTTGGTCCTGCTCCTGGTGTTCCTCACAGCCACACCAAACCTTATGTTCGATCTAAGGGAAGGAAGTTTGAGAGGGCTAGAGGAAGGAGGAACAGCCGAGGATTTAGGGTGTGA 573 0.466 MDTQGIDLKAGGKSKKTKRTAPKSNDIYLKLLVKLYRFLDRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIKYTKGKEDRIAVVVGTVTDDIRVYEVPPLKVTALRFTETARARIEKAGGECLTFDQLALRAPLGENTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGRRNSRGFRV 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02064 190 MobiDBLite consensus disorder prediction 154 190 - -
Vimu3g02064 190 FunFam 60S ribosomal protein L18 4 190 - -
Vimu3g02064 190 MobiDBLite consensus disorder prediction 1 20 - -
Vimu3g02064 190 SUPERFAMILY Ribosomal proteins L15p and L18e 23 142 IPR036227 -
Vimu3g02064 190 MobiDBLite consensus disorder prediction 167 190 - -
Vimu3g02064 190 PANTHER 60S RIBOSOMAL PROTEIN L18 5 190 IPR000039 GO:0003735|GO:0005840|GO:0006412
Vimu3g02064 190 Gene3D - 4 190 - -
Vimu3g02064 190 Pfam Ribosomal protein 60S L18 and 50S L18e 5 190 IPR021131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02064 Vimu-Chr3 35545270 35547093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g02064 6 190 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 78.495 2.14e-102 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02064 K02883 - gmx:100791657 335.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02064 3 35545270 35547093 Vimu3g02064 3 35545270 35547093 ECH
Vimu2g01860 2 13449520 13451113 Vimu3g02064 3 35545270 35547093 PCT